myRT

myRT report for GCA_000937235.1_Velvet_assembly

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Seq: CDSM01000009.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_11_length_90132_cov_53.812176, whole genome shotgun sequence (90202 bp)
Overview 1 RT 1: 46571-55886 bp Neighborhood of RT #1 [46571, 56290] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 46571-46870 bp Feature: gene Location: 46938-47957 bp Feature: domain Description: KOG1000 Location: 47013-47208 bp Feature: domain Description: KOG1 000 Location: 4701 3-47208 bp Feature: gene Location: 47990-49801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48254-49076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48254-49076 bp Feature: domain Description: Intron_maturas2 Location: 49145-49619 bp Feature: domain Description: Intron_maturas2 Location: 491 45-4961 9 bp Feature: domain Description: HNHc Note: nucleases Location: 49619-49784 bp Feature: domain Description: HNHc Note: nucleases Location: 4961 9-49784 bp Feature: gene Location: 50041-50241 bp Feature: gene Location: 50366-56290 bp Feature: domain Description: N6_Mtase Location: 52400-52991 bp Feature: domain Description: N6_Mtase Location: 52400-52991 bp Feature: domain Description: COG4646 Location: 53582-55886 bp Feature: domain Description: COG4646 Location: 53582-55886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )