myRT

myRT report for GCA_000937655.1_Velvet_assembly

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Seq: CEGX01000001.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_1_length_182473_cov_20.598215, whole genome shotgun sequence (182535 bp)
Overview 1 RT 1: 43525-53674 bp Neighborhood of RT #1 [43525, 53674] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 43525-44034 bp Feature: gene Location: 44085-49547 bp Feature: domain Description: N6_Mtase Location: 46098-46689 bp Feature: domain Description: N6_Mtase Location: 46098-46689 bp Feature: domain Description: COG4646 Location: 47280-49404 bp Feature: domain Description: COG4646 Location: 47280-49404 bp Feature: gene Location: 50045-51823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50306-51098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50306-51 098 bp Feature: domain Description: Intron_maturas2 Location: 51203-51434 bp Feature: domain Description: Intron_maturas2 Location: 51 203-51 434 bp Feature: domain Description: HNHc Note: nucleases Location: 51599-51785 bp Feature: domain Description: HNHc Note: nucleases Location: 51 599-51 785 bp Feature: gene Location: 51961-53304 bp Feature: domain Description: KOG1000 Location: 52240-52555 bp Feature: domain Description: KOG1 000 Location: 52240-52555 bp Feature: gene Location: 53375-53674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )