myRT

myRT report for GCA_000937815.1_Velvet_assembly

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Seq: CEFN01000009.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_9_length_162889_cov_17.013481, whole genome shotgun sequence (162951 bp)
Overview 1 RT 1: 5279-14576 bp Neighborhood of RT #1 [5279, 14980] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 5279-5578 bp Feature: gene Location: 5649-6668 bp Feature: domain Description: KOG1000 Location: 5724-5919 bp Feature: domain Description: KOG1 000 Location: 5724-591 9 bp Feature: gene Location: 6701-8512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6965-7787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6965-7787 bp Feature: domain Description: Intron_maturas2 Location: 7856-8309 bp Feature: domain Description: Intron_maturas2 Location: 7856-8309 bp Feature: domain Description: HNHc Note: nucleases Location: 8327-8483 bp Feature: domain Description: HNHc Note: nucleases Location: 8327-8483 bp Feature: gene Location: 8752-8952 bp Feature: gene Location: 9077-14980 bp Feature: domain Description: N6_Mtase Location: 11087-11678 bp Feature: domain Description: N6_Mtase Location: 1 1 087-1 1 678 bp Feature: domain Description: COG4646 Location: 12272-14576 bp Feature: domain Description: COG4646 Location: 1 2272-1 4576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: CEFN01000033.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_34_length_2238_cov_36.112602, whole genome shotgun sequence (2300 bp)
Overview 1 RT 1: 1-2160 bp Neighborhood of RT #1 [1, 2186] RVT-GII GIIM Omega_Repress Feature: gene Location: 1-153 bp Feature: gene Location: 519-1796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723-1338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 3-1338 bp Feature: domain Description: GIIM Note: maturase Location: 1392-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1392 -1605 bp Feature: gene Location: 1947-2186 bp Feature: domain Description: Omega_Repress Location: 1950-2160 bp Feature: domain Description: Omega_Repress Location: 1950-2 160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Omega_Repress (pfam07764), RVT-GII, GIIM (pfam08388)