myRT

myRT report for GCA_000937915.1_Velvet_assembly

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Seq: CEHP01000004.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_4_length_236254_cov_13.493359, whole genome shotgun sequence (236310 bp)
Overview 1 RT 1: 67470-75204 bp 2 RT 2: 81405-90258 bp Neighborhood of RT #1 [67470, 75245] PrgI VirB4_CagE RVT_N RVT-GII GIIM TraC-F-type Peptidase_M23 Phage_lysozyme2 PRK08581 Neighborhood of RT #2 [81405, 90335] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc SF2_C_SNF Feature: gene Location: 67470-67823 bp Feature: domain Description: PrgI Location: 67482-67740 bp Feature: domain Description: PrgI Location: 67482-67740 bp Feature: gene Location: 67780-69267 bp Feature: domain Description: VirB4_CagE Location: 68341-68998 bp Feature: domain Description: VirB4_CagE Location: 68341 -68998 bp Feature: gene Location: 69765-71471 bp Feature: RT Description: RVT_N Location: 69870-70110 bp Feature: RT Description: RVT_N Location: 69870-701 1 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70158-70818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701 58-7081 8 bp Feature: domain Description: GIIM Note: maturase Location: 70887-71106 bp Feature: domain Description: GIIM Note: maturase Location: 70887-71 1 06 bp Feature: gene Location: 71404-72444 bp Feature: domain Description: TraC-F-type Location: 71569-72265 bp Feature: domain Description: TraC-F-type Location: 71 569-72265 bp Feature: gene Location: 72441-75245 bp Feature: domain Description: Peptidase_M23 Location: 73887-74091 bp Feature: domain Description: Peptidase_M23 Location: 73887-74091 bp Feature: domain Description: Phage_lysozyme2 Location: 74244-74754 bp Feature: domain Description: Phage_lysozyme2 Location: 74244-74754 bp Feature: domain Description: PRK08581 Location: 74871-75204 bp Feature: domain Description: PRK08581 Location: 74871 -75204 bp Feature: gene Location: 81405-81956 bp Feature: gene Location: 82007-87454 bp Feature: domain Description: N6_Mtase Location: 84014-84605 bp Feature: domain Description: N6_Mtase Location: 8401 4-84605 bp Feature: domain Description: COG4646 Location: 85196-87296 bp Feature: domain Description: COG4646 Location: 851 96-87296 bp Feature: gene Location: 87952-89730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88213-89005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8821 3-89005 bp Feature: domain Description: Intron_maturas2 Location: 89110-89341 bp Feature: domain Description: Intron_maturas2 Location: 891 1 0-89341 bp Feature: domain Description: HNHc Note: nucleases Location: 89506-89692 bp Feature: domain Description: HNHc Note: nucleases Location: 89506-89692 bp Feature: gene Location: 89868-90017 bp Feature: gene Location: 90057-90335 bp Feature: domain Description: SF2_C_SNF Location: 90114-90258 bp Feature: domain Description: SF2_C_SNF Location: 901 1 4-90258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), VirB4_CagE (TIGR00929), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), N6_Mtase (pfam02384)
COG4646 (Adenine-specific DNA methylase, N12 class ), Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793)