myRT

myRT report for GCA_000939915.1_Velvet_assembly

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Seq: CEHO01000006.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_6_length_182455_cov_13.083138, whole genome shotgun sequence (182499 bp)
Overview 1 RT 1: 128844-138993 bp Neighborhood of RT #1 [128844, 138993] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 128844-129143 bp Feature: gene Location: 129214-130557 bp Feature: domain Description: KOG1000 Location: 129493-129808 bp Feature: domain Description: KOG1 000 Location: 1 29493-1 29808 bp Feature: gene Location: 130695-132473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130956-131748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 30956-1 31 748 bp Feature: domain Description: Intron_maturas2 Location: 131853-132084 bp Feature: domain Description: Intron_maturas2 Location: 1 31 853-1 32084 bp Feature: domain Description: HNHc Note: nucleases Location: 132249-132435 bp Feature: domain Description: HNHc Note: nucleases Location: 1 32249-1 32435 bp Feature: gene Location: 132971-138433 bp Feature: domain Description: N6_Mtase Location: 134984-135575 bp Feature: domain Description: N6_Mtase Location: 1 34984-1 35575 bp Feature: domain Description: COG4646 Location: 136166-138290 bp Feature: domain Description: COG4646 Location: 1 361 66-1 38290 bp Feature: gene Location: 138484-138993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )