myRT

myRT report for GCA_000940075.1_Velvet_assembly

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Seq: CDSQ01000028.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_42_length_257465_cov_57.840569, whole genome shotgun sequence (257535 bp)
Overview 1 RT 1: 245193-253885 bp Neighborhood of RT #1 [245193, 253885] TnpV SF2_C_SNF RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 245193-245567 bp Feature: domain Description: TnpV Location: 245229-245559 bp Feature: domain Description: TnpV Location: 245229-245559 bp Feature: gene Location: 245548-246015 bp Feature: domain Description: SF2_C_SNF Location: 245794-245938 bp Feature: domain Description: SF2_C_SNF Location: 245794-245938 bp Feature: gene Location: 246153-247940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246423-247215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246423-24721 5 bp Feature: domain Description: Intron_maturas2 Location: 247320-247551 bp Feature: domain Description: Intron_maturas2 Location: 247320-247551 bp Feature: domain Description: HNHc Note: nucleases Location: 247716-247902 bp Feature: domain Description: HNHc Note: nucleases Location: 24771 6-247902 bp Feature: gene Location: 248429-253315 bp Feature: domain Description: N6_Mtase Location: 249866-250454 bp Feature: domain Description: N6_Mtase Location: 249866-250454 bp Feature: domain Description: COG4646 Location: 251048-253172 bp Feature: domain Description: COG4646 Location: 251 048-2531 72 bp Feature: gene Location: 253400-253885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), SF2_C_SNF (cd18793), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )