myRT

myRT report for GCA_000940175.1_Velvet_assembly

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Seq: CEKF01000011.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_11_length_31560_cov_12.347845, whole genome shotgun sequence (31620 bp)
Overview 1 RT 1: 12425-21723 bp Neighborhood of RT #1 [12425, 21723] TnpV SF2_C_SNF RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 12425-12799 bp Feature: domain Description: TnpV Location: 12461-12791 bp Feature: domain Description: TnpV Location: 1 2461 -1 2791 bp Feature: gene Location: 12780-13247 bp Feature: domain Description: SF2_C_SNF Location: 13023-13170 bp Feature: domain Description: SF2_C_SNF Location: 1 3023-1 31 70 bp Feature: gene Location: 13385-15163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13646-14438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3646-1 4438 bp Feature: domain Description: Intron_maturas2 Location: 14543-14774 bp Feature: domain Description: Intron_maturas2 Location: 1 4543-1 4774 bp Feature: domain Description: HNHc Note: nucleases Location: 14939-15125 bp Feature: domain Description: HNHc Note: nucleases Location: 1 4939-1 51 25 bp Feature: gene Location: 15661-21123 bp Feature: domain Description: N6_Mtase Location: 17674-18265 bp Feature: domain Description: N6_Mtase Location: 1 7674-1 8265 bp Feature: domain Description: COG4646 Location: 18856-20980 bp Feature: domain Description: COG4646 Location: 1 8856-20980 bp Feature: gene Location: 21172-21723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), SF2_C_SNF (cd18793), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )