myRT

myRT report for GCA_000941115.1_Velvet_assembly

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Seq: CEEH01000050.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_55_length_96278_cov_11.559203, whole genome shotgun sequence (96328 bp)
Overview 1 RT 1: 42667-52816 bp Neighborhood of RT #1 [42667, 52816] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 42667-42966 bp Feature: gene Location: 43037-44380 bp Feature: domain Description: KOG1000 Location: 43316-43631 bp Feature: domain Description: KOG1 000 Location: 4331 6-43631 bp Feature: gene Location: 44518-46296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44779-45571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44779-45571 bp Feature: domain Description: Intron_maturas2 Location: 45676-45907 bp Feature: domain Description: Intron_maturas2 Location: 45676-45907 bp Feature: domain Description: HNHc Note: nucleases Location: 46072-46258 bp Feature: domain Description: HNHc Note: nucleases Location: 46072-46258 bp Feature: gene Location: 46794-52256 bp Feature: domain Description: N6_Mtase Location: 48807-49398 bp Feature: domain Description: N6_Mtase Location: 48807-49398 bp Feature: domain Description: COG4646 Location: 49989-52113 bp Feature: domain Description: COG4646 Location: 49989-521 1 3 bp Feature: gene Location: 52307-52816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )