myRT

myRT report for GCA_000941315.1_Velvet_assembly

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Seq: CEDB01000013.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_13_length_174481_cov_14.597652, whole genome shotgun sequence (174533 bp)
Overview 1 RT 1: 51225-58915 bp Neighborhood of RT #1 [51225, 58998] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM VirB4_CagE PrgI Feature: gene Location: 51225-54029 bp Feature: domain Description: Peptidase_M23 Location: 52671-52875 bp Feature: domain Description: Peptidase_M23 Location: 52671 -52875 bp Feature: domain Description: Phage_lysozyme2 Location: 53028-53538 bp Feature: domain Description: Phage_lysozyme2 Location: 53028-53538 bp Feature: domain Description: PRK08581 Location: 53655-53988 bp Feature: domain Description: PRK08581 Location: 53655-53988 bp Feature: gene Location: 54026-55066 bp Feature: domain Description: TraC-F-type Location: 54191-54887 bp Feature: domain Description: TraC-F-type Location: 541 91 -54887 bp Feature: gene Location: 54999-56705 bp Feature: domain Description: RVT_N Location: 55104-55344 bp Feature: domain Description: RVT_N Location: 551 04-55344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55392-56052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55392-56052 bp Feature: domain Description: GIIM Note: maturase Location: 56121-56340 bp Feature: domain Description: GIIM Note: maturase Location: 561 21 -56340 bp Feature: gene Location: 57201-58688 bp Feature: domain Description: VirB4_CagE Location: 57762-58419 bp Feature: domain Description: VirB4_CagE Location: 57762-5841 9 bp Feature: gene Location: 58645-58998 bp Feature: domain Description: PrgI Location: 58657-58915 bp Feature: domain Description: PrgI Location: 58657-5891 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirB4_CagE (TIGR00929), PrgI (pfam12666)

Seq: CEDB01000094.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_209_length_50624_cov_16.295631, whole genome shotgun sequence (50676 bp)
Overview 1 RT 1: 26300-36471 bp Neighborhood of RT #1 [26300, 36471] MutT_pyrophosphohydrolase COG3886 SSL2 DUF3427 RVT-UG8 RVT-UG3 valS Feature: gene Location: 26300-26692 bp Feature: domain Description: MutT_pyrophosphohydrolase Location: 26318-26684 bp Feature: domain Description: MutT_pyrophosphohydrolase Location: 2 6318-2 6684 bp Feature: gene Location: 26716-29583 bp Feature: domain Description: COG3886 Location: 26725-27298 bp Feature: domain Description: COG3886 Location: 2 672 5-2 72 98 bp Feature: domain Description: SSL2 Location: 27334-28633 bp Feature: domain Description: SSL2 Location: 2 7334-2 8633 bp Feature: domain Description: DUF3427 Location: 28765-29575 bp Feature: domain Description: DUF342 7 Location: 2 8765-2 9575 bp Feature: gene Location: 29728-31269 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 29854-30304 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 9854-30304 bp Feature: gene Location: 31241-31648 bp Feature: gene Location: 31894-33018 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 32110-32533 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 32 110-32 533 bp Feature: gene Location: 33213-35864 bp Feature: domain Description: valS Location: 33219-35850 bp Feature: domain Description: valS Location: 332 19-35850 bp Feature: gene Location: 36040-36471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MutT_pyrophosphohydrolase (cd03425), COG3886 (HKD family nuclease ), SSL2 (COG1061), DUF3427 (pfam11907), RVT-UG8, RVT-UG3, valS (TIGR00422)