myRT

myRT report for GCA_000942335.1_Velvet_assembly

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Seq: CEKO01000004.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_4_length_182468_cov_17.017422, whole genome shotgun sequence (182524 bp)
Overview 1 RT 1: 128857-139006 bp Neighborhood of RT #1 [128857, 139006] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 128857-129156 bp Feature: gene Location: 129227-130570 bp Feature: domain Description: KOG1000 Location: 129506-129821 bp Feature: domain Description: KOG1 000 Location: 1 29506-1 29821 bp Feature: gene Location: 130708-132486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130969-131761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 30969-1 31 761 bp Feature: domain Description: Intron_maturas2 Location: 131866-132097 bp Feature: domain Description: Intron_maturas2 Location: 1 31 866-1 32097 bp Feature: domain Description: HNHc Note: nucleases Location: 132262-132448 bp Feature: domain Description: HNHc Note: nucleases Location: 1 32262-1 32448 bp Feature: gene Location: 132984-138446 bp Feature: domain Description: N6_Mtase Location: 134997-135588 bp Feature: domain Description: N6_Mtase Location: 1 34997-1 35588 bp Feature: domain Description: COG4646 Location: 136179-138303 bp Feature: domain Description: COG4646 Location: 1 361 79-1 38303 bp Feature: gene Location: 138497-139006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )