myRT

myRT report for GCA_000942375.1_Velvet_assembly

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Seq: CEEK01000020.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_20_length_49272_cov_14.382225, whole genome shotgun sequence (49328 bp)
Overview 1 RT 1: 20836-33533 bp Neighborhood of RT #1 [20836, 33533] KOG1000 RVT-GII Intron_maturas2 HNHc SF2_C_SNF RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 20836-21135 bp Feature: gene Location: 21206-22225 bp Feature: domain Description: KOG1000 Location: 21281-21476 bp Feature: domain Description: KOG1 000 Location: 21 281 -21 476 bp Feature: gene Location: 22258-24069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22522-23344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22522-23344 bp Feature: domain Description: Intron_maturas2 Location: 23413-23887 bp Feature: domain Description: Intron_maturas2 Location: 2341 3-23887 bp Feature: domain Description: HNHc Note: nucleases Location: 23887-24052 bp Feature: domain Description: HNHc Note: nucleases Location: 23887-24052 bp Feature: gene Location: 24309-24509 bp Feature: gene Location: 24634-25056 bp Feature: domain Description: SF2_C_SNF Location: 24877-25024 bp Feature: domain Description: SF2_C_SNF Location: 24877-25024 bp Feature: gene Location: 25194-26981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25464-26256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25464-26256 bp Feature: domain Description: Intron_maturas2 Location: 26361-26592 bp Feature: domain Description: Intron_maturas2 Location: 26361 -26592 bp Feature: domain Description: HNHc Note: nucleases Location: 26757-26943 bp Feature: domain Description: HNHc Note: nucleases Location: 26757-26943 bp Feature: gene Location: 27470-32932 bp Feature: domain Description: N6_Mtase Location: 29483-30074 bp Feature: domain Description: N6_Mtase Location: 29483-30074 bp Feature: domain Description: COG4646 Location: 30668-32789 bp Feature: domain Description: COG4646 Location: 30668-32789 bp Feature: gene Location: 32982-33533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )