myRT

myRT report for GCA_000942395.1_Pytheasella_massiliensis

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Seq: LN812102.1 Thermoactinomycetaceae bacterium GD1 genome assembly Pytheasella massiliensis, scaffold scaffold00006, whole genome shotgun sequence (2122970 bp)
Overview 1 RT 1: 467035-471827 bp 2 RT 2: 1443103-1447464 bp 3 RT 3: 1717408-1724026 bp Neighborhood of RT #1 [467035, 471827] MltB NlpD RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [1443103, 1447464] YciI PRK03114 RVT-UG12 STKc_PknB_like SPOR Neighborhood of RT #3 [1717408, 1725252] acpS RVT-Retrons SWIM MOR2-PAG1_N Feature: gene Location: 467035-467295 bp Feature: gene Location: 467539-468294 bp Feature: domain Description: MltB Location: 467659-467776 bp Feature: domain Description: MltB Location: 467659-467776 bp Feature: domain Description: NlpD Location: 467782-468289 bp Feature: domain Description: NlpD Location: 467782-468289 bp Feature: gene Location: 468401-470227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 468665-469499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 468665-469499 bp Feature: domain Description: Intron_maturas2 Location: 469583-469871 bp Feature: domain Description: Intron_maturas2 Location: 469583-469871 bp Feature: domain Description: HNHc Note: nucleases Location: 470057-470198 bp Feature: domain Description: HNHc Note: nucleases Location: 470057-4701 98 bp Feature: gene Location: 470814-471191 bp Feature: gene Location: 471192-471827 bp Feature: gene Location: 1443103-1443396 bp Feature: domain Description: YciI Location: 1443106-1443346 bp Feature: domain Description: YciI Location: 1 4431 06-1 443346 bp Feature: gene Location: 1443445-1443981 bp Feature: domain Description: PRK03114 Location: 1443478-1443973 bp Feature: domain Description: PRK031 1 4 Location: 1 443478-1 443973 bp Feature: gene Location: 1443982-1445484 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1444303-1444747 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 444303-1 444747 bp Feature: gene Location: 1445652-1447043 bp Feature: domain Description: STKc_PknB_like Location: 1445679-1446453 bp Feature: domain Description: STKc_PknB_like Location: 1 445679-1 446453 bp Feature: domain Description: SPOR Location: 1446813-1447023 bp Feature: domain Description: SPOR Location: 1 44681 3-1 447023 bp Feature: gene Location: 1447090-1447464 bp Feature: gene Location: 1717408-1717788 bp Feature: domain Description: acpS Location: 1717411-1717771 bp Feature: domain Description: acpS Location: 1 71 741 1 -1 71 7771 bp Feature: gene Location: 1717853-1719529 bp Feature: gene Location: 1719628-1721091 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1720207-1720825 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 720207-1 720825 bp Feature: gene Location: 1721108-1722754 bp Feature: domain Description: SWIM Location: 1722611-1722731 bp Feature: domain Description: SWIM Location: 1 72261 1 -1 722731 bp Feature: gene Location: 1722766-1725252 bp Feature: domain Description: MOR2-PAG1_N Location: 1723843-1724026 bp Feature: domain Description: MOR2-PAG1 _N Location: 1 723843-1 724026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MltB (TIGR02282), NlpD (COG0739), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YciI (COG2350), PRK03114 (DUF84 family protein), RVT-UG12, STKc_PknB_like (cd14014), SPOR (pfam05036)
acpS (TIGR00516), RVT-Retrons, SWIM (pfam04434), MOR2-PAG1_N (pfam14222)