myRT

myRT report for GCA_000942515.1_Velvet_assembly

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Seq: CECZ01000039.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_42_length_62468_cov_18.810448, whole genome shotgun sequence (62534 bp)
Overview 1 RT 1: 19055-29204 bp Neighborhood of RT #1 [19055, 29204] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 19055-19354 bp Feature: gene Location: 19425-20768 bp Feature: domain Description: KOG1000 Location: 19704-20019 bp Feature: domain Description: KOG1 000 Location: 1 9704-2001 9 bp Feature: gene Location: 20906-22684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21167-21959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 67-21 959 bp Feature: domain Description: Intron_maturas2 Location: 22064-22295 bp Feature: domain Description: Intron_maturas2 Location: 22064-22295 bp Feature: domain Description: HNHc Note: nucleases Location: 22460-22646 bp Feature: domain Description: HNHc Note: nucleases Location: 22460-22646 bp Feature: gene Location: 23182-28644 bp Feature: domain Description: N6_Mtase Location: 25195-25786 bp Feature: domain Description: N6_Mtase Location: 251 95-25786 bp Feature: domain Description: COG4646 Location: 26377-28501 bp Feature: domain Description: COG4646 Location: 26377-28501 bp Feature: gene Location: 28695-29204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )