myRT

myRT report for GCA_000942535.1_Velvet_assembly

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Seq: CDTZ01000009.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_9_length_414892_cov_47.133934, whole genome shotgun sequence (414962 bp)
Overview 1 RT 1: 162927-173242 bp Neighborhood of RT #1 [162927, 173242] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 162927-163478 bp Feature: gene Location: 163529-169444 bp Feature: domain Description: N6_Mtase Location: 165554-166145 bp Feature: domain Description: N6_Mtase Location: 1 65554-1 661 45 bp Feature: domain Description: COG4646 Location: 166736-169040 bp Feature: domain Description: COG4646 Location: 1 66736-1 69040 bp Feature: gene Location: 170009-171820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170273-171095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 70273-1 71 095 bp Feature: domain Description: Intron_maturas2 Location: 171164-171638 bp Feature: domain Description: Intron_maturas2 Location: 1 71 1 64-1 71 638 bp Feature: domain Description: HNHc Note: nucleases Location: 171638-171803 bp Feature: domain Description: HNHc Note: nucleases Location: 1 71 638-1 71 803 bp Feature: gene Location: 171961-172872 bp Feature: gene Location: 172943-173242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)