myRT

myRT report for GCA_000942635.1_Velvet_assembly

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Seq: CEKD01000001.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_1_length_89390_cov_22.044479, whole genome shotgun sequence (89446 bp)
Overview 1 RT 1: 33301-42592 bp Neighborhood of RT #1 [33301, 42600] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc SF2_C_SNF TnpV Feature: gene Location: 33301-33852 bp Feature: gene Location: 33902-39364 bp Feature: domain Description: N6_Mtase Location: 35912-36518 bp Feature: domain Description: N6_Mtase Location: 3591 2-3651 8 bp Feature: domain Description: COG4646 Location: 37094-39218 bp Feature: domain Description: COG4646 Location: 37094-3921 8 bp Feature: gene Location: 39862-41640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40123-40915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 23-4091 5 bp Feature: domain Description: Intron_maturas2 Location: 41020-41251 bp Feature: domain Description: Intron_maturas2 Location: 41 020-41 251 bp Feature: domain Description: HNHc Note: nucleases Location: 41416-41602 bp Feature: domain Description: HNHc Note: nucleases Location: 41 41 6-41 602 bp Feature: gene Location: 41778-42245 bp Feature: domain Description: SF2_C_SNF Location: 42021-42168 bp Feature: domain Description: SF2_C_SNF Location: 42021 -421 68 bp Feature: gene Location: 42226-42600 bp Feature: domain Description: TnpV Location: 42262-42592 bp Feature: domain Description: TnpV Location: 42262-42592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793), TnpV (pfam14198)