myRT

myRT report for GCA_000942815.1_Ec138B_L2_MIRA_assembly

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Seq: CCBZ01000604.1 (3603 bp)
Overview 1 RT 1: 1-3583 bp Neighborhood of RT #1 [1, 3600] PRK09692 SLATT_5 RVT-UG17 Psu Feature: gene Location: 1-846 bp Feature: domain Description: PRK09692 Location: 16-829 bp Feature: domain Description: PRK09692 Location: 1 6-829 bp Feature: gene Location: 863-1504 bp Feature: domain Description: SLATT_5 Location: 866-1472 bp Feature: domain Description: SLATT_5 Location: 866-1 472 bp Feature: gene Location: 1699-3108 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1936-2548 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 936-2548 bp Feature: gene Location: 3433-3600 bp Feature: domain Description: Psu Location: 3442-3583 bp Feature: domain Description: Psu Location: 3442-3583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), SLATT_5 (pfam18160), RVT-UG17, Psu (pfam07455)

Seq: CCBZ01000757.1 (3699 bp)
Overview 1 RT 1: 354-3655 bp Neighborhood of RT #1 [354, 3696] RVT_N RVT-GII GIIM RhsA Feature: gene Location: 354-536 bp Feature: gene Location: 816-2369 bp Feature: domain Description: RVT_N Location: 864-1101 bp Feature: domain Description: RVT_N Location: 864-1101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1152-1794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1152 -1794 bp Feature: domain Description: GIIM Note: maturase Location: 1845-2079 bp Feature: domain Description: GIIM Note: maturase Location: 1845-2 079 bp Feature: gene Location: 2563-3696 bp Feature: domain Description: RhsA Location: 2578-3655 bp Feature: domain Description: RhsA Location: 2 578-3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RhsA (COG3209)