myRT

myRT report for GCA_000942935.1_Velvet_assembly

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Seq: CEGY01000070.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_145_length_66724_cov_19.703751, whole genome shotgun sequence (66780 bp)
Overview 1 RT 1: 8475-17766 bp 2 RT 2: 34304-37977 bp Neighborhood of RT #1 [8475, 17774] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc SF2_C_SNF TnpV Neighborhood of RT #2 [34304, 37985] ArsD RVT-GII GIIM HK_WalK HK_WalK Feature: gene Location: 8475-9026 bp Feature: gene Location: 9076-14538 bp Feature: domain Description: N6_Mtase Location: 11089-11680 bp Feature: domain Description: N6_Mtase Location: 1 1 089-1 1 680 bp Feature: domain Description: COG4646 Location: 12271-14395 bp Feature: domain Description: COG4646 Location: 1 2271 -1 4395 bp Feature: gene Location: 15036-16814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15297-16089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5297-1 6089 bp Feature: domain Description: Intron_maturas2 Location: 16188-16425 bp Feature: domain Description: Intron_maturas2 Location: 1 61 88-1 6425 bp Feature: domain Description: HNHc Note: nucleases Location: 16590-16776 bp Feature: domain Description: HNHc Note: nucleases Location: 1 6590-1 6776 bp Feature: gene Location: 16952-17419 bp Feature: domain Description: SF2_C_SNF Location: 17198-17342 bp Feature: domain Description: SF2_C_SNF Location: 1 71 98-1 7342 bp Feature: gene Location: 17400-17774 bp Feature: domain Description: TnpV Location: 17436-17766 bp Feature: domain Description: TnpV Location: 1 7436-1 7766 bp Feature: gene Location: 34304-34675 bp Feature: domain Description: ArsD Location: 34307-34673 bp Feature: domain Description: ArsD Location: 34307-34673 bp Feature: gene Location: 34695-34874 bp Feature: gene Location: 35240-36028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35444-36023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35444-36023 bp Feature: gene Location: 36025-36516 bp Feature: domain Description: GIIM Note: maturase Location: 36112-36331 bp Feature: domain Description: GIIM Note: maturase Location: 361 1 2-36331 bp Feature: gene Location: 36588-37985 bp Feature: domain Description: HK_WalK Location: 36597-37326 bp Feature: domain Description: HK_WalK Location: 36597-37326 bp Feature: domain Description: HK_WalK Location: 37326-37977 bp Feature: domain Description: HK_WalK Location: 37326-37977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793), TnpV (pfam14198), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), ArsD (pfam06953), GIIM (pfam08388), HK_WalK (NF033092)