myRT

myRT report for GCA_000943075.1_Velvet_assembly

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Seq: CEDE01000004.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_4_length_1526_cov_157.765396, whole genome shotgun sequence (1574 bp)
Overview 1 RT 1: 231-1326 bp Neighborhood of RT #1 [231, 1508] RVT-GII GIIM Feature: gene Location: 231-1508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435-1050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435-1 050 bp Feature: domain Description: GIIM Note: maturase Location: 1104-1326 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 04-1 326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CEDE01000092.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_179_length_12859_cov_25.196360, whole genome shotgun sequence (12907 bp)
Overview 1 RT 1: 4479-12739 bp Neighborhood of RT #1 [4479, 12777] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4479-4988 bp Feature: gene Location: 5039-10501 bp Feature: domain Description: N6_Mtase Location: 7052-7643 bp Feature: domain Description: N6_Mtase Location: 7052 -7643 bp Feature: domain Description: COG4646 Location: 8234-10358 bp Feature: domain Description: COG4646 Location: 82 34-10358 bp Feature: gene Location: 10999-12777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11260-12052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 60-12 052 bp Feature: domain Description: Intron_maturas2 Location: 12157-12388 bp Feature: domain Description: Intron_maturas2 Location: 12 157-12 388 bp Feature: domain Description: HNHc Note: nucleases Location: 12553-12739 bp Feature: domain Description: HNHc Note: nucleases Location: 12 553-12 739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )