myRT

myRT report for GCA_000943095.1_ST15

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Seq: CDQG01000027.1 (41149 bp)
Overview 1 RT 1: 2094-10724 bp Neighborhood of RT #1 [2094, 10729] FimC FimD RVT-UG4 PRK09692 YqgA Feature: gene Location: 2094-2858 bp Ori: CEO84772.1 Gene: fimC_5 Feature: domain Description: FimC Location: 2139-2841 bp Feature: domain Description: FimC Location: 21 39-2841 bp Feature: gene Location: 2905-5499 bp Ori: CEO84773.1 Gene: fim_5 Feature: domain Description: FimD Location: 2947-5488 bp Feature: domain Description: FimD Location: 2947-5488 bp Feature: gene Location: 5496-7577 bp Ori: CEO84774.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5907-6351 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5907-6351 bp Feature: gene Location: 8335-9198 bp Ori: CEO84775.1 Gene: intA_5 Feature: domain Description: PRK09692 Location: 8359-9196 bp Feature: domain Description: PRK09692 Location: 8359-91 96 bp Feature: gene Location: 10016-10729 bp Ori: CEO84776.1 Feature: domain Description: YqgA Location: 10022-10724 bp Feature: domain Description: YqgA Location: 1 0022-1 0724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, PRK09692 (Integrase; provisional), YqgA (COG1811)

Seq: CDQG01000022.1 (51510 bp)
Overview 1 RT 1: 47944-50676 bp Neighborhood of RT #1 [47944, 50771] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 47944-48177 bp Ori: CEO84317.1 Gene: ykfF_2 Feature: domain Description: DUF905 Location: 47974-48172 bp Feature: domain Description: DUF905 Location: 47974-48172 bp Feature: gene Location: 48235-48675 bp Ori: CEO84318.1 Gene: ssb_2 Feature: domain Description: PRK13732 Location: 48238-48673 bp Feature: domain Description: PRK13732 Location: 482 38-48673 bp Feature: gene Location: 48870-50771 bp Ori: CEO84319.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49137-49968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49137-49968 bp Feature: domain Description: Intron_maturas2 Location: 50082-50340 bp Feature: domain Description: Intron_maturas2 Location: 50082 -50340 bp Feature: domain Description: HNHc Note: nucleases Location: 50514-50676 bp Feature: domain Description: HNHc Note: nucleases Location: 50514-50676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CDQG01000050.1 (9449 bp)
Overview 1 RT 1: 633-5811 bp Neighborhood of RT #1 [633, 5819] HHA RVT-GII PRK10276 umuC Feature: gene Location: 633-1700 bp Feature: gene Location: 1786-2040 bp Ori: CEO85761.1 Gene: hha_2 Feature: domain Description: HHA Location: 1837-2020 bp Feature: domain Description: HHA Location: 183 7-2020 bp Feature: gene Location: 2553-4040 bp Ori: CEO85762.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2958-3648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2958-3 648 bp Feature: gene Location: 4126-4548 bp Ori: CEO85763.1 Gene: umuD_4 Feature: domain Description: PRK10276 Location: 4132-4534 bp Feature: domain Description: PRK10276 Location: 413 2-453 4 bp Feature: gene Location: 4548-5819 bp Ori: CEO85764.1 Gene: umuC_4 Feature: domain Description: umuC Location: 4551-5811 bp Feature: domain Description: umuC Location: 4551-5811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HHA (pfam05321), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)