myRT

myRT report for GCA_000943175.1_Velvet_assembly

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Seq: CEHW01000010.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_10_length_1734_cov_196.889847, whole genome shotgun sequence (1784 bp)
Overview 1 RT 1: 66-1152 bp Neighborhood of RT #1 [66, 1343] RVT-GII GIIM Feature: gene Location: 66-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270-885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270-885 bp Feature: domain Description: GIIM Note: maturase Location: 939-1152 bp Feature: domain Description: GIIM Note: maturase Location: 939-1 1 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CEHW01000046.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_50_length_110459_cov_12.441693, whole genome shotgun sequence (110509 bp)
Overview 1 RT 1: 95918-106220 bp Neighborhood of RT #1 [95918, 106220] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 95918-96469 bp Feature: gene Location: 96519-102422 bp Feature: domain Description: N6_Mtase Location: 98529-99120 bp Feature: domain Description: N6_Mtase Location: 9852 9-9912 0 bp Feature: domain Description: COG4646 Location: 99714-102018 bp Feature: domain Description: COG4646 Location: 99714-102 018 bp Feature: gene Location: 102987-104798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103251-104073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032 51-104073 bp Feature: domain Description: Intron_maturas2 Location: 104142-104616 bp Feature: domain Description: Intron_maturas2 Location: 104142 -104616 bp Feature: domain Description: HNHc Note: nucleases Location: 104616-104781 bp Feature: domain Description: HNHc Note: nucleases Location: 104616-104781 bp Feature: gene Location: 104831-105850 bp Feature: domain Description: KOG1000 Location: 104906-105101 bp Feature: domain Description: KOG1000 Location: 104906-105101 bp Feature: gene Location: 105921-106220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )