myRT

myRT report for GCA_000943235.1_Velvet_assembly

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Seq: CDXX01000004.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_4_length_77015_cov_47.097656, whole genome shotgun sequence (77085 bp)
Overview 1 RT 1: 33599-42707 bp Neighborhood of RT #1 [33599, 42751] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc SF2_C_SNF Omega_Repress Feature: gene Location: 33599-34150 bp Feature: gene Location: 34200-39641 bp Feature: domain Description: N6_Mtase Location: 36192-36783 bp Feature: domain Description: N6_Mtase Location: 361 92-36783 bp Feature: domain Description: COG4646 Location: 37374-39498 bp Feature: domain Description: COG4646 Location: 37374-39498 bp Feature: gene Location: 40139-41917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40400-41192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40400-41 1 92 bp Feature: domain Description: Intron_maturas2 Location: 41297-41528 bp Feature: domain Description: Intron_maturas2 Location: 41 297-41 528 bp Feature: domain Description: HNHc Note: nucleases Location: 41693-41879 bp Feature: domain Description: HNHc Note: nucleases Location: 41 693-41 879 bp Feature: gene Location: 42055-42498 bp Feature: domain Description: SF2_C_SNF Location: 42301-42445 bp Feature: domain Description: SF2_C_SNF Location: 42301 -42445 bp Feature: gene Location: 42581-42751 bp Feature: domain Description: Omega_Repress Location: 42584-42707 bp Feature: domain Description: Omega_Repress Location: 42584-42707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793), Omega_Repress (pfam07764)