myRT

myRT report for GCA_000944175.1_Velvet_assembly

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Seq: CEJK01000007.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_7_length_165693_cov_18.932827, whole genome shotgun sequence (165753 bp)
Overview 1 RT 1: 48595-58757 bp Neighborhood of RT #1 [48595, 58757] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 48595-48894 bp Feature: gene Location: 48965-50308 bp Feature: domain Description: KOG1000 Location: 49244-49559 bp Feature: domain Description: KOG1 000 Location: 49244-49559 bp Feature: gene Location: 50446-52224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50707-51499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50707-51 499 bp Feature: domain Description: Intron_maturas2 Location: 51604-51835 bp Feature: domain Description: Intron_maturas2 Location: 51 604-51 835 bp Feature: domain Description: HNHc Note: nucleases Location: 52000-52186 bp Feature: domain Description: HNHc Note: nucleases Location: 52000-521 86 bp Feature: gene Location: 52722-58169 bp Feature: domain Description: N6_Mtase Location: 54717-55311 bp Feature: domain Description: N6_Mtase Location: 5471 7-5531 1 bp Feature: domain Description: COG4646 Location: 55902-58026 bp Feature: domain Description: COG4646 Location: 55902-58026 bp Feature: gene Location: 58206-58757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )