myRT

myRT report for GCA_000944375.1_Velvet_assembly

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Seq: CEDZ01000013.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_13_length_150305_cov_20.248575, whole genome shotgun sequence (150369 bp)
Overview 1 RT 1: 2-8770 bp Neighborhood of RT #1 [2, 8778] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc SF2_C_SNF TnpV Feature: gene Location: 2-5542 bp Feature: domain Description: N6_Mtase Location: 2093-2684 bp Feature: domain Description: N6_Mtase Location: 2093-2684 bp Feature: domain Description: COG4646 Location: 3278-5399 bp Feature: domain Description: COG4646 Location: 3278-5399 bp Feature: gene Location: 6040-7818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6301-7093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6301 -7093 bp Feature: domain Description: Intron_maturas2 Location: 7198-7429 bp Feature: domain Description: Intron_maturas2 Location: 71 98-7429 bp Feature: domain Description: HNHc Note: nucleases Location: 7594-7780 bp Feature: domain Description: HNHc Note: nucleases Location: 7594-7780 bp Feature: gene Location: 7956-8423 bp Feature: domain Description: SF2_C_SNF Location: 8202-8346 bp Feature: domain Description: SF2_C_SNF Location: 8202-8346 bp Feature: gene Location: 8404-8778 bp Feature: domain Description: TnpV Location: 8440-8770 bp Feature: domain Description: TnpV Location: 8440-8770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793), TnpV (pfam14198)