myRT

myRT report for GCA_000944395.1_1e8A_assembly

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Seq: CDPR01000073.1 Bacteroides acidifaciens genome assembly 1e8A_assembly, contig CC.1e8_A_c73, whole genome shotgun sequence (16895 bp)
Overview 1 RT 1: 7857-16629 bp Neighborhood of RT #1 [7857, 16892] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 7857-9653 bp Feature: domain Description: rpsA Location: 7926-9528 bp Feature: domain Description: rpsA Location: 7926-9528 bp Feature: gene Location: 9765-15725 bp Feature: domain Description: DUF4011 Location: 10980-11493 bp Feature: domain Description: DUF401 1 Location: 1 0980-1 1 493 bp Feature: domain Description: DEXXQc_SF1 Location: 11832-12495 bp Feature: domain Description: DEXXQc_SF1 Location: 1 1 832-1 2495 bp Feature: domain Description: DEXXQc_SF1 Location: 13251-14019 bp Feature: domain Description: DEXXQc_SF1 Location: 1 3251 -1 401 9 bp Feature: domain Description: TIGR00376 Location: 14151-14538 bp Feature: domain Description: TIGR00376 Location: 1 41 51 -1 4538 bp Feature: domain Description: MTES_1575 Location: 14691-14976 bp Feature: domain Description: MTES_1 575 Location: 1 4691 -1 4976 bp Feature: domain Description: DUF3320 Location: 15231-15375 bp Feature: domain Description: DUF3320 Location: 1 5231 -1 5375 bp Feature: gene Location: 15759-16892 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16083-16629 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 6083-1 6629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: CDPR01000309.1 Bacteroides acidifaciens genome assembly 1e8A_assembly, contig CC.1e8_A_c310, whole genome shotgun sequence (7805 bp)
Overview 1 RT 1: 88-4323 bp Neighborhood of RT #1 [88, 4406] RVT-GII Lipocalin_3 DAP2 Feature: gene Location: 88-756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-709 bp Feature: gene Location: 1270-1695 bp Feature: domain Description: Lipocalin_3 Location: 1345-1603 bp Feature: domain Description: Lipocalin_3 Location: 1345-1603 bp Feature: gene Location: 1701-4406 bp Feature: domain Description: DAP2 Location: 3201-4323 bp Feature: domain Description: DAP2 Location: 32 01-432 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lipocalin_3 (pfam12702), DAP2 (COG1506), RVT-GII

Seq: CDPR01000580.1 Bacteroides acidifaciens genome assembly 1e8A_assembly, contig CC.1e8_A_c582, whole genome shotgun sequence (4291 bp)
Overview 1 RT 1: 32-3043 bp Neighborhood of RT #1 [32, 3072] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 32-310 bp Feature: gene Location: 273-1694 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 648-1434 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 648-143 4 bp Feature: gene Location: 1709-2116 bp Feature: domain Description: Avd_like Location: 1742-2051 bp Feature: domain Description: Avd_like Location: 1742-2051 bp Feature: gene Location: 2263-3072 bp Feature: domain Description: DUF1566 Location: 2794-3043 bp Feature: domain Description: DUF1566 Location: 2794-3 043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs

Seq: CDPR01000834.1 Bacteroides acidifaciens genome assembly 1e8A_assembly, contig CC.1e8_A_c848, whole genome shotgun sequence (1835 bp)
Overview 1 RT 1: 1-1671 bp Neighborhood of RT #1 [1, 1832] SpmB TIGR00043 RVT-GII GIIM Feature: gene Location: 1-240 bp Feature: domain Description: SpmB Location: 4-235 bp Feature: domain Description: SpmB Location: 4 -235 bp Feature: gene Location: 257-676 bp Feature: domain Description: TIGR00043 Location: 368-662 bp Feature: domain Description: TIGR0004 3 Location: 368-662 bp Feature: gene Location: 819-1832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 822-1386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 822-1386 bp Feature: domain Description: GIIM Note: maturase Location: 1440-1671 bp Feature: domain Description: GIIM Note: maturase Location: 14 4 0-1671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpmB (COG0700), TIGR00043 (rRNA maturation RNase YbeY), RVT-GII, GIIM (pfam08388)

Seq: CDPR01001384.1 Bacteroides acidifaciens genome assembly 1e8A_assembly, contig CC.1e8_A_rep_c2475, whole genome shotgun sequence (12037 bp)
Overview 1 RT 1: 371-11712 bp Neighborhood of RT #1 [371, 11750] Laminin_G_3 Laminin_G_3 pfam08757 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 371-1528 bp Feature: gene Location: 1538-8326 bp Feature: domain Description: Laminin_G_3 Location: 3227-3323 bp Feature: domain Description: Laminin_G_3 Location: 3227-3323 bp Feature: domain Description: Laminin_G_3 Location: 3974-4355 bp Feature: domain Description: Laminin_G_3 Location: 3974-435 5 bp Feature: domain Description: pfam08757 Location: 5153-5474 bp Feature: domain Description: pfam0875 7 Location: 5 15 3-5 474 bp Feature: gene Location: 8700-10055 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8970-9648 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8970-9648 bp Feature: gene Location: 10057-10551 bp Feature: gene Location: 10605-11750 bp Feature: domain Description: Arm-DNA-bind_5 Location: 10629-10875 bp Feature: domain Description: Arm-DNA-bind_5 Location: 10629-10875 bp Feature: domain Description: Phage_int_SAM_5 Location: 10914-11199 bp Feature: domain Description: Phage_int_SAM_5 Location: 10914-11199 bp Feature: domain Description: INTN1_C_like Location: 11238-11712 bp Feature: domain Description: INTN1_C_like Location: 11238-11712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs