myRT

myRT report for GCA_000944535.1_Velvet_assembly

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Seq: CEIY01000019.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_24_length_196256_cov_16.580690, whole genome shotgun sequence (196312 bp)
Overview 1 RT 1: 142645-152794 bp Neighborhood of RT #1 [142645, 152794] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 142645-142944 bp Feature: gene Location: 143015-144358 bp Feature: domain Description: KOG1000 Location: 143294-143609 bp Feature: domain Description: KOG1 000 Location: 1 43294-1 43609 bp Feature: gene Location: 144496-146274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144757-145549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 44757-1 45549 bp Feature: domain Description: Intron_maturas2 Location: 145654-145885 bp Feature: domain Description: Intron_maturas2 Location: 1 45654-1 45885 bp Feature: domain Description: HNHc Note: nucleases Location: 146050-146236 bp Feature: domain Description: HNHc Note: nucleases Location: 1 46050-1 46236 bp Feature: gene Location: 146772-152234 bp Feature: domain Description: N6_Mtase Location: 148785-149376 bp Feature: domain Description: N6_Mtase Location: 1 48785-1 49376 bp Feature: domain Description: COG4646 Location: 149967-152091 bp Feature: domain Description: COG4646 Location: 1 49967-1 52091 bp Feature: gene Location: 152285-152794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )