myRT

myRT report for GCA_000944615.1_Velvet_assembly

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Seq: CEHU01000006.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_6_length_178433_cov_16.965433, whole genome shotgun sequence (178493 bp)
Overview 1 RT 1: 156302-166464 bp Neighborhood of RT #1 [156302, 166464] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 156302-156601 bp Feature: gene Location: 156672-158015 bp Feature: domain Description: KOG1000 Location: 156951-157266 bp Feature: domain Description: KOG1 000 Location: 1 56951 -1 57266 bp Feature: gene Location: 158153-159931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158414-159206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5841 4-1 59206 bp Feature: domain Description: Intron_maturas2 Location: 159311-159542 bp Feature: domain Description: Intron_maturas2 Location: 1 5931 1 -1 59542 bp Feature: domain Description: HNHc Note: nucleases Location: 159707-159893 bp Feature: domain Description: HNHc Note: nucleases Location: 1 59707-1 59893 bp Feature: gene Location: 160429-165876 bp Feature: domain Description: N6_Mtase Location: 162424-163018 bp Feature: domain Description: N6_Mtase Location: 1 62424-1 6301 8 bp Feature: domain Description: COG4646 Location: 163609-165733 bp Feature: domain Description: COG4646 Location: 1 63609-1 65733 bp Feature: gene Location: 165913-166464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )