myRT

myRT report for GCA_000944695.1_assembly_v1

Download annotations/find similar RTs

Seq: LK996017.1 Desulfitobacterium hafniense strain PCE-S genome assembly, scaffold: scaffold0 (5594916 bp)
Overview 1 RT 1: 124613-129519 bp 2 RT 2: 1938872-1951035 bp 3 RT 3: 1984404-1991231 bp 4 RT 4: 2580205-2585245 bp 5 RT 5: 3135828-3141178 bp 6 RT 6: 3203958-3210868 bp 7 RT 7: 4343332-4347310 bp 8 RT 8: 4627116-4633745 bp 9 RT 9: 5125791-5130321 bp Neighborhood of RT #1 [124613, 129519] DUF5131 RVT-GII Intron_maturas2 HNHc DUF3852 Neighborhood of RT #2 [1938872, 1951190] COG4120 PhnK RVT-GII GIIM addA_Gpos addA_Gpos addA_Gpos addB_Gpos addB_Gpos Neighborhood of RT #3 [1984404, 1991323] DUF3102 bZIP_Maf HTH_XRE RVT_N RVT-GII GIIM RVT-GII GIIM TIGR04076 Acetyltransf_3 Neighborhood of RT #4 [2580205, 2585340] Aldolase_II CitB RVT-GII GIIM spore_ytfJ DUF2953 Neighborhood of RT #5 [3135828, 3141297] RVT-UG7 Cas5_I-B Cas_Cas7 Neighborhood of RT #6 [3203958, 3210951] TAT_signal RDH RVT-UG13 SIR2-like DUF429 Neighborhood of RT #7 [4343332, 4347351] RVT-GII Intron_maturas2 KOG4404 YcxB Neighborhood of RT #8 [4627116, 4633753] PRK05788 CobM RVT-GII GIIM Precorrin_2_C20_MT Precorrin-6Y-methylase CobL Neighborhood of RT #9 [5125791, 5130329] DUF2680 RVT-GII GIIM PRK08311 Feature: gene Location: 124613-125335 bp Ori: CDX00015.1 Feature: domain Description: DUF5131 Location: 124619-125246 bp Feature: domain Description: DUF51 31 Location: 1 2461 9-1 25246 bp Feature: gene Location: 125715-126062 bp Feature: gene Location: 126332-128149 bp Ori: CDX00017.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126596-127418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 26596-1 2741 8 bp Feature: domain Description: Intron_maturas2 Location: 127499-127817 bp Feature: domain Description: Intron_maturas2 Location: 1 27499-1 2781 7 bp Feature: domain Description: HNHc Note: nucleases Location: 127970-128120 bp Feature: domain Description: HNHc Note: nucleases Location: 1 27970-1 281 20 bp Feature: gene Location: 128725-128979 bp Ori: CDX00018.1 Feature: domain Description: DUF3852 Location: 128737-128956 bp Feature: domain Description: DUF3852 Location: 1 28737-1 28956 bp Feature: gene Location: 129049-129519 bp Feature: gene Location: 1938872-1939801 bp Ori: CDX01738.1 Feature: domain Description: COG4120 Location: 1938884-1939733 bp Feature: domain Description: COG41 20 Location: 1 938884-1 939733 bp Feature: gene Location: 1939776-1940579 bp Ori: CDX01739.1 Feature: domain Description: PhnK Location: 1939779-1940562 bp Feature: domain Description: PhnK Location: 1 939779-1 940562 bp Feature: gene Location: 1941237-1942646 bp Ori: CDX01740.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1941591-1942209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 941 591 -1 942209 bp Feature: domain Description: GIIM Note: maturase Location: 1942260-1942485 bp Feature: domain Description: GIIM Note: maturase Location: 1 942260-1 942485 bp Feature: gene Location: 1943363-1947541 bp Ori: CDX01741.1 Feature: domain Description: addA_Gpos Location: 1943378-1944968 bp Feature: domain Description: addA_Gpos Location: 1 943378-1 944968 bp Feature: domain Description: addA_Gpos Location: 1945097-1946507 bp Feature: domain Description: addA_Gpos Location: 1 945097-1 946507 bp Feature: domain Description: addA_Gpos Location: 1946660-1947470 bp Feature: domain Description: addA_Gpos Location: 1 946660-1 947470 bp Feature: gene Location: 1947534-1951190 bp Ori: CDX01742.1 Feature: domain Description: addB_Gpos Location: 1947537-1950483 bp Feature: domain Description: addB_Gpos Location: 1 947537-1 950483 bp Feature: domain Description: addB_Gpos Location: 1950534-1951035 bp Feature: domain Description: addB_Gpos Location: 1 950534-1 951 035 bp Feature: gene Location: 1984404-1985258 bp Ori: CDX01777.1 Feature: domain Description: DUF3102 Location: 1984428-1984812 bp Feature: domain Description: DUF31 02 Location: 1 984428-1 98481 2 bp Feature: domain Description: bZIP_Maf Location: 1984812-1984962 bp Feature: domain Description: bZIP_Maf Location: 1 98481 2-1 984962 bp Feature: gene Location: 1985469-1985720 bp Ori: CDX01778.1 Feature: domain Description: HTH_XRE Location: 1985526-1985703 bp Feature: domain Description: HTH_XRE Location: 1 985526-1 985703 bp Feature: gene Location: 1986435-1988114 bp Ori: CDX01779.1 Feature: domain Description: RVT_N Location: 1986513-1986756 bp Feature: domain Description: RVT_N Location: 1 98651 3-1 986756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1986801-1987461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 986801 -1 987461 bp Feature: domain Description: GIIM Note: maturase Location: 1987533-1987749 bp Feature: domain Description: GIIM Note: maturase Location: 1 987533-1 987749 bp Feature: gene Location: 1988119-1988367 bp Feature: gene Location: 1989155-1990181 bp Ori: CDX01781.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1989263-1989881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 989263-1 989881 bp Feature: domain Description: GIIM Note: maturase Location: 1989932-1990157 bp Feature: domain Description: GIIM Note: maturase Location: 1 989932-1 9901 57 bp Feature: gene Location: 1990531-1990752 bp Ori: CDX01782.1 Feature: domain Description: TIGR04076 Location: 1990534-1990741 bp Feature: domain Description: TIGR04076 Location: 1 990534-1 990741 bp Feature: gene Location: 1990805-1991323 bp Ori: CDX01783.1 Feature: domain Description: Acetyltransf_3 Location: 1990826-1991231 bp Feature: domain Description: Acetyltransf_3 Location: 1 990826-1 991 231 bp Feature: gene Location: 2580205-2580966 bp Ori: CDX02360.1 Feature: domain Description: Aldolase_II Location: 2580286-2580805 bp Feature: domain Description: Aldolase_II Location: 2580286-2580805 bp Feature: gene Location: 2581037-2581651 bp Ori: CDX02361.1 Feature: domain Description: CitB Location: 2581052-2581625 bp Feature: domain Description: CitB Location: 2581 052-2581 625 bp Feature: gene Location: 2581886-2583295 bp Ori: CDX02362.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2582240-2582858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2582240-2582858 bp Feature: domain Description: GIIM Note: maturase Location: 2582909-2583134 bp Feature: domain Description: GIIM Note: maturase Location: 2582909-25831 34 bp Feature: gene Location: 2584142-2584591 bp Ori: CDX02363.1 Feature: domain Description: spore_ytfJ Location: 2584151-2584541 bp Feature: domain Description: spore_ytfJ Location: 25841 51 -2584541 bp Feature: gene Location: 2584690-2585340 bp Ori: CDX02364.1 Feature: domain Description: DUF2953 Location: 2585086-2585245 bp Feature: domain Description: DUF2953 Location: 2585086-2585245 bp Feature: gene Location: 3135828-3136055 bp Feature: gene Location: 3137959-3139530 bp Ori: CDX02910.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3138376-3138766 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 31 38376-31 38766 bp Feature: gene Location: 3139597-3140292 bp Ori: CDX02911.1 Feature: domain Description: Cas5_I-B Location: 3139609-3139972 bp Feature: domain Description: Cas5_I-B Location: 31 39609-31 39972 bp Feature: gene Location: 3140332-3141297 bp Ori: CDX02912.1 Feature: domain Description: Cas_Cas7 Location: 3140359-3141178 bp Feature: domain Description: Cas_Cas7 Location: 31 40359-31 41 1 78 bp Feature: gene Location: 3203958-3204275 bp Feature: gene Location: 3204338-3205993 bp Ori: CDX02974.1 Feature: domain Description: TAT_signal Location: 3204347-3204413 bp Feature: domain Description: TAT_signal Location: 3204347-320441 3 bp Feature: domain Description: RDH Location: 3204995-3205901 bp Feature: domain Description: RDH Location: 3204995-3205901 bp Feature: gene Location: 3206697-3208220 bp Ori: CDX02975.1 Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 3207111-3207579 bp Feature: RT Description: RVT-UG1 3 Note: UG1 3 RT Location: 32071 1 1 -3207579 bp Feature: gene Location: 3208425-3210038 bp Ori: CDX02976.1 Feature: domain Description: SIR2-like Location: 3208485-3209061 bp Feature: domain Description: SIR2-like Location: 3208485-3209061 bp Feature: gene Location: 3210187-3210951 bp Ori: CDX02977.1 Feature: domain Description: DUF429 Location: 3210217-3210868 bp Feature: domain Description: DUF429 Location: 321 021 7-321 0868 bp Feature: gene Location: 4343332-4343499 bp Feature: gene Location: 4343545-4344399 bp Feature: gene Location: 4344905-4346680 bp Ori: CDX04031.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4345178-4345970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43451 78-4345970 bp Feature: domain Description: Intron_maturas2 Location: 4346051-4346342 bp Feature: domain Description: Intron_maturas2 Location: 4346051 -4346342 bp Feature: gene Location: 4346677-4346835 bp Feature: gene Location: 4346782-4347351 bp Ori: CDX04033.1 Feature: domain Description: KOG4404 Location: 4346830-4346935 bp Feature: domain Description: KOG4404 Location: 4346830-4346935 bp Feature: domain Description: YcxB Location: 4347139-4347310 bp Feature: domain Description: YcxB Location: 43471 39-434731 0 bp Feature: gene Location: 4627116-4628255 bp Ori: CDX04287.1 Feature: domain Description: PRK05788 Location: 4627119-4628241 bp Feature: domain Description: PRK05788 Location: 46271 1 9-4628241 bp Feature: gene Location: 4628252-4629037 bp Ori: CDX04288.1 Feature: domain Description: CobM Location: 4628285-4629026 bp Feature: domain Description: CobM Location: 4628285-4629026 bp Feature: gene Location: 4629499-4630908 bp Ori: CDX04289.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4629853-4630471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4629853-4630471 bp Feature: domain Description: GIIM Note: maturase Location: 4630522-4630750 bp Feature: domain Description: GIIM Note: maturase Location: 4630522-4630750 bp Feature: gene Location: 4631545-4632288 bp Ori: CDX04290.1 Feature: domain Description: Precorrin_2_C20_MT Location: 4631608-4632274 bp Feature: domain Description: Precorrin_2_C20_MT Location: 4631 608-4632274 bp Feature: gene Location: 4632386-4633753 bp Ori: CDX04291.1 Feature: domain Description: Precorrin-6Y-methylase Location: 4632536-4633127 bp Feature: domain Description: Precorrin-6Y-methylase Location: 4632536-46331 27 bp Feature: domain Description: CobL Location: 4633193-4633745 bp Feature: domain Description: CobL Location: 46331 93-4633745 bp Feature: gene Location: 5125791-5126234 bp Feature: gene Location: 5126420-5126785 bp Ori: CDX04777.1 Feature: domain Description: DUF2680 Location: 5126516-5126669 bp Feature: domain Description: DUF2680 Location: 51 2651 6-51 26669 bp Feature: gene Location: 5127152-5128561 bp Ori: CDX04778.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5127506-5128121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 27506-51 281 21 bp Feature: domain Description: GIIM Note: maturase Location: 5128175-5128403 bp Feature: domain Description: GIIM Note: maturase Location: 51 281 75-51 28403 bp Feature: gene Location: 5129014-5129448 bp Feature: gene Location: 5129628-5130329 bp Ori: CDX04780.1 Feature: domain Description: PRK08311 Location: 5129646-5130321 bp Feature: domain Description: PRK0831 1 Location: 51 29646-51 30321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5131 (pfam07505), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3852 (pfam12963), COG4120 (ABC-type uncharacterized transport system, permease component ), PhnK (COG4107), GIIM (pfam08388), addA_Gpos (TIGR02785), addB_Gpos (TIGR02773)
DUF3102 (pfam11300), bZIP_Maf (pfam03131), HTH_XRE (smart00530), RVT_N (pfam13655), TIGR04076 (TIGR04076 family protein), Acetyltransf_3 (pfam13302), Aldolase_II (smart01007), CitB (TIGR02484), spore_ytfJ (TIGR02874), DUF2953 (pfam11167)
RVT-UG7, Cas5_I-B (cd09692), Cas_Cas7 (pfam05107), TAT_signal (pfam10518), RDH (TIGR02486), RVT-UG13, SIR2-like (cd01406), DUF429 (pfam04250), KOG4404 (KOG4404, Tandem pore domain K+ channel TASK3/THIK-1 ), YcxB (pfam14317)
PRK05788 (cobalt-precorrin 5A hydrolase), CobM (COG2875), Precorrin_2_C20_MT (cd11645), Precorrin-6Y-methylase, CobL (COG2242), DUF2680 (pfam10925), PRK08311 (RNA polymerase sigma factor SigI)