myRT

myRT report for GCA_000945035.1_Velvet_assembly

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Seq: CEKC01000001.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_1_length_89392_cov_17.050833, whole genome shotgun sequence (89450 bp)
Overview 1 RT 1: 33303-42594 bp Neighborhood of RT #1 [33303, 42602] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc SF2_C_SNF TnpV Feature: gene Location: 33303-33854 bp Feature: gene Location: 33904-39366 bp Feature: domain Description: N6_Mtase Location: 35914-36520 bp Feature: domain Description: N6_Mtase Location: 3591 4-36520 bp Feature: domain Description: COG4646 Location: 37096-39220 bp Feature: domain Description: COG4646 Location: 37096-39220 bp Feature: gene Location: 39864-41642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40125-40917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 25-4091 7 bp Feature: domain Description: Intron_maturas2 Location: 41022-41253 bp Feature: domain Description: Intron_maturas2 Location: 41 022-41 253 bp Feature: domain Description: HNHc Note: nucleases Location: 41418-41604 bp Feature: domain Description: HNHc Note: nucleases Location: 41 41 8-41 604 bp Feature: gene Location: 41780-42247 bp Feature: domain Description: SF2_C_SNF Location: 42023-42170 bp Feature: domain Description: SF2_C_SNF Location: 42023-421 70 bp Feature: gene Location: 42228-42602 bp Feature: domain Description: TnpV Location: 42264-42594 bp Feature: domain Description: TnpV Location: 42264-42594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793), TnpV (pfam14198)