myRT

myRT report for GCA_000945415.1_Velvet_assembly

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Seq: CEIS01000016.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_16_length_12485_cov_28.783981, whole genome shotgun sequence (12543 bp)
Overview 1 RT 1: 113-8451 bp Neighborhood of RT #1 [113, 8451] RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 113-1891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1 1 66 bp Feature: domain Description: Intron_maturas2 Location: 1265-1502 bp Feature: domain Description: Intron_maturas2 Location: 1 265-1 502 bp Feature: domain Description: HNHc Note: nucleases Location: 1667-1853 bp Feature: domain Description: HNHc Note: nucleases Location: 1 667-1 853 bp Feature: gene Location: 2389-7863 bp Feature: domain Description: N6_Mtase Location: 4414-5005 bp Feature: domain Description: N6_Mtase Location: 441 4-5005 bp Feature: domain Description: COG4646 Location: 5596-7720 bp Feature: domain Description: COG4646 Location: 5596-7720 bp Feature: gene Location: 7900-8451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: CEIS01000031.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_42_length_567_cov_42.059963, whole genome shotgun sequence (625 bp)
Overview 1 RT 1: 2-368 bp Neighborhood of RT #1 [2, 559] RVT-GII GIIM Feature: gene Location: 2-559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-101 bp Feature: domain Description: GIIM Note: maturase Location: 155-368 bp Feature: domain Description: GIIM Note: maturase Location: 155-368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CEIS01000064.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_109_length_947_cov_46.101372, whole genome shotgun sequence (1005 bp)
Overview 1 RT 1: 1-778 bp Neighborhood of RT #1 [1, 777] RVT-GII Feature: gene Location: 1-777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII