myRT

myRT report for GCA_000945515.1_Velvet_assembly

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Seq: CEJM01000012.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_15_length_12044_cov_18.343906, whole genome shotgun sequence (12102 bp)
Overview 1 RT 1: 4298-11696 bp Neighborhood of RT #1 [4298, 12100] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 4298-4597 bp Feature: gene Location: 4668-5687 bp Feature: domain Description: KOG1000 Location: 4743-4938 bp Feature: domain Description: KOG1 000 Location: 4743-4938 bp Feature: gene Location: 5720-7531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5984-6806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5984-6806 bp Feature: domain Description: Intron_maturas2 Location: 6875-7328 bp Feature: domain Description: Intron_maturas2 Location: 6875-7328 bp Feature: domain Description: HNHc Note: nucleases Location: 7346-7502 bp Feature: domain Description: HNHc Note: nucleases Location: 7346-7502 bp Feature: gene Location: 7771-7971 bp Feature: gene Location: 8096-12100 bp Feature: domain Description: N6_Mtase Location: 8207-8798 bp Feature: domain Description: N6_Mtase Location: 8207-8798 bp Feature: domain Description: COG4646 Location: 9395-11696 bp Feature: domain Description: COG4646 Location: 9395-1 1 696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: CEJM01000064.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_73_length_1355_cov_318.566803, whole genome shotgun sequence (1413 bp)
Overview 1 RT 1: 67-1153 bp Neighborhood of RT #1 [67, 1344] RVT-GII GIIM Feature: gene Location: 67-1344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 71-886 bp Feature: domain Description: GIIM Note: maturase Location: 940-1153 bp Feature: domain Description: GIIM Note: maturase Location: 940-1153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CEJM01000117.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_134_length_325_cov_37.553844, whole genome shotgun sequence (383 bp)
Overview 1 RT 1: 1-379 bp Neighborhood of RT #1 [1, 381] RVT-GII GIIM Feature: gene Location: 1-381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-175 bp Feature: domain Description: GIIM Note: maturase Location: 244-379 bp Feature: domain Description: GIIM Note: maturase Location: 244-3 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CEJM01000195.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_300_length_593_cov_14.124789, whole genome shotgun sequence (651 bp)
Overview 1 RT 1: 3-648 bp Neighborhood of RT #1 [3, 650] RVT-GII Feature: gene Location: 3-650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108-648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108-64 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CEJM01000298.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_560_length_593_cov_14.337268, whole genome shotgun sequence (651 bp)
Overview 1 RT 1: 3-648 bp Neighborhood of RT #1 [3, 650] RVT-GII Feature: gene Location: 3-650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108-648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108-648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CEJM01000316.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_627_length_14192_cov_16.667067, whole genome shotgun sequence (14250 bp)
Overview 1 RT 1: 7803-11064 bp Neighborhood of RT #1 [7803, 11064] RVT-GII TraG-D_C Feature: gene Location: 7803-7934 bp Feature: gene Location: 7940-8104 bp Feature: gene Location: 8251-10161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8560-9316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 856 0-9316 bp Feature: gene Location: 10172-10804 bp Feature: domain Description: TraG-D_C Location: 10265-10592 bp Feature: domain Description: TraG-D_C Location: 1026 5-10592 bp Feature: gene Location: 10822-11064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII