myRT

myRT report for GCA_000945975.1_Velvet_assembly

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Seq: CEEL01000040.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_69_length_290898_cov_17.264891, whole genome shotgun sequence (290960 bp)
Overview 1 RT 1: 175233-185382 bp Neighborhood of RT #1 [175233, 185786] RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 175233-175625 bp Feature: gene Location: 175615-176622 bp Feature: gene Location: 176655-178466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176919-177741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7691 9-1 77741 bp Feature: domain Description: Intron_maturas2 Location: 177810-178284 bp Feature: domain Description: Intron_maturas2 Location: 1 7781 0-1 78284 bp Feature: domain Description: HNHc Note: nucleases Location: 178284-178449 bp Feature: domain Description: HNHc Note: nucleases Location: 1 78284-1 78449 bp Feature: gene Location: 178706-178906 bp Feature: gene Location: 179031-185786 bp Feature: domain Description: N6_Mtase Location: 182157-182745 bp Feature: domain Description: N6_Mtase Location: 1 821 57-1 82745 bp Feature: domain Description: COG4646 Location: 182808-185382 bp Feature: domain Description: COG4646 Location: 1 82808-1 85382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: CEEL01000052.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_114_length_214840_cov_18.272221, whole genome shotgun sequence (214902 bp)
Overview 1 RT 1: 28125-33528 bp Neighborhood of RT #1 [28125, 33548] Tn916-Xis Integrase_DNA Phage_int_SAM_5 Phage_integrase RVT-Retrons HisM HisM Feature: gene Location: 28125-28328 bp Feature: domain Description: Tn916-Xis Location: 28140-28317 bp Feature: domain Description: Tn916-Xis Location: 2 8140-2 8317 bp Feature: gene Location: 28410-29627 bp Feature: domain Description: Integrase_DNA Location: 28413-28623 bp Feature: domain Description: Integrase_DNA Location: 2 8413-2 862 3 bp Feature: domain Description: Phage_int_SAM_5 Location: 28680-28932 bp Feature: domain Description: Phage_int_SAM_5 Location: 2 8680-2 8932 bp Feature: domain Description: Phage_integrase Location: 28980-29559 bp Feature: domain Description: Phage_integrase Location: 2 8980-2 9559 bp Feature: gene Location: 29996-31978 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30119-30845 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30119-30845 bp Feature: gene Location: 32176-32835 bp Feature: domain Description: HisM Location: 32209-32821 bp Feature: domain Description: HisM Location: 32 2 09-32 82 1 bp Feature: gene Location: 32850-33548 bp Feature: domain Description: HisM Location: 32898-33528 bp Feature: domain Description: HisM Location: 32 898-3352 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tn916-Xis (pfam09035), Integrase_DNA (pfam02920), Phage_int_SAM_5 (pfam13102), Phage_integrase (pfam00589), RVT-Retrons, HisM (COG0765)