myRT

myRT report for GCA_000946815.1_Syntrophaceticus_schinkii

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Seq: CDRZ01000272.1 Syntrophaceticus schinkii genome assembly Syntrophaceticus schinkii, scaffold SSCH_Contig_72, whole genome shotgun sequence (15001 bp)
Overview 1 RT 1: 11679-14509 bp Neighborhood of RT #1 [11679, 14883] DUF4153 RVT-GII Feature: gene Location: 11679-12590 bp Ori: CEO90101.1 Feature: domain Description: DUF4153 Location: 11874-12534 bp Feature: domain Description: DUF41 53 Location: 1 1 874-1 2534 bp Feature: gene Location: 12628-13173 bp Feature: gene Location: 13840-14883 bp Ori: CEO90103.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13843-14509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3843-1 4509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4153 (pfam13687), RVT-GII

Seq: CDRZ01000264.1 Syntrophaceticus schinkii genome assembly Syntrophaceticus schinkii, scaffold SSCH_Contig_65, whole genome shotgun sequence (14644 bp)
Overview 1 RT 1: 6164-13506 bp Neighborhood of RT #1 [6164, 13514] PHA02517 RVT-Retrons Trypsin_2 RVT-Retrons RVT-GII GIIM RVT_N RVT-GII PHA02517 InsE Feature: gene Location: 6164-6757 bp Ori: CEO89927.1 Feature: domain Description: PHA02517 Location: 6167-6722 bp Feature: domain Description: PHA02 517 Location: 6167-672 2 bp Feature: gene Location: 6900-7187 bp Feature: gene Location: 7648-8931 bp Ori: CEO89929.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7675-8008 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7675-8008 bp Feature: domain Description: Trypsin_2 Location: 8404-8824 bp Feature: domain Description: Trypsin_2 Location: 8404-882 4 bp Feature: gene Location: 9035-9322 bp Ori: CEO89930.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9188-9320 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9188-932 0 bp Feature: gene Location: 10574-11479 bp Ori: CEO89931.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10580-10961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10580-10961 bp Feature: domain Description: GIIM Note: maturase Location: 11012-11249 bp Feature: domain Description: GIIM Note: maturase Location: 11012 -112 49 bp Feature: gene Location: 11514-12086 bp Ori: CEO89932.1 Feature: domain Description: RVT_N Location: 11586-11829 bp Feature: domain Description: RVT_N Location: 11586-1182 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11874-12036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11874-12 036 bp Feature: gene Location: 12616-13215 bp Ori: CEO89933.1 Feature: domain Description: PHA02517 Location: 12670-13195 bp Feature: domain Description: PHA02 517 Location: 12 670-13195 bp Feature: gene Location: 13233-13514 bp Ori: CEO89934.1 Feature: domain Description: InsE Location: 13242-13506 bp Feature: domain Description: InsE Location: 132 42 -13506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-Retrons, Trypsin_2 (pfam13365), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), InsE (COG2963)

Seq: CDRZ01000102.1 Syntrophaceticus schinkii genome assembly Syntrophaceticus schinkii, scaffold SSCH_Contig_190, whole genome shotgun sequence (4454 bp)
Overview 1 RT 1: 987-4403 bp Neighborhood of RT #1 [987, 4403] DUF1848 RVT-UG25 Feature: gene Location: 987-1892 bp Ori: CEO88471.1 Feature: domain Description: DUF1848 Location: 1002-1797 bp Feature: domain Description: DUF1848 Location: 1002-1797 bp Feature: gene Location: 1903-2169 bp Feature: gene Location: 2291-3970 bp Ori: CEO88473.1 Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 3212-3605 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 3 212-3 605 bp Feature: gene Location: 3978-4403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1848 (pfam08902), RVT-UG25

Seq: CDRZ01000207.1 Syntrophaceticus schinkii genome assembly Syntrophaceticus schinkii, scaffold SSCH_Contig_285, whole genome shotgun sequence (1229 bp)
Overview 1 RT 1: 107-760 bp Neighborhood of RT #1 [107, 876] RVT-GII group_II_RT_mat Feature: gene Location: 107-421 bp Ori: CEO88852.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110-4 19 bp Feature: gene Location: 538-876 bp Ori: CEO88853.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 544-760 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 54 4 -760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: CDRZ01000174.1 Syntrophaceticus schinkii genome assembly Syntrophaceticus schinkii, scaffold SSCH_Contig_255, whole genome shotgun sequence (1514 bp)
Overview 1 RT 1: 173-1166 bp Neighborhood of RT #1 [173, 1273] RVT-GII Feature: gene Location: 173-379 bp Feature: gene Location: 515-1273 bp Ori: CEO88767.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 770-1166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 770-1166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CDRZ01000171.1 Syntrophaceticus schinkii genome assembly Syntrophaceticus schinkii, scaffold SSCH_Contig_252, whole genome shotgun sequence (9949 bp)
Overview 1 RT 1: 6164-9123 bp Neighborhood of RT #1 [6164, 9497] YgiQ RVT-GII Feature: gene Location: 6164-7663 bp Ori: CEO88755.1 Feature: domain Description: YgiQ Location: 6419-7259 bp Feature: domain Description: YgiQ Location: 6 419-7259 bp Feature: gene Location: 7835-8041 bp Feature: gene Location: 8178-9497 bp Ori: CEO88757.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8433-9123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8433-9123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgiQ (COG1032), RVT-GII