myRT

myRT report for GCA_000946915.1_Velvet_assembly

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Seq: CEEP01000073.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_96_length_86550_cov_18.346054, whole genome shotgun sequence (86608 bp)
Overview 1 RT 1: 15798-28495 bp Neighborhood of RT #1 [15798, 28495] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc SF2_C_SNF RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 15798-16349 bp Feature: gene Location: 16399-21861 bp Feature: domain Description: N6_Mtase Location: 18412-19003 bp Feature: domain Description: N6_Mtase Location: 1 841 2-1 9003 bp Feature: domain Description: COG4646 Location: 19597-21718 bp Feature: domain Description: COG4646 Location: 1 9597-21 71 8 bp Feature: gene Location: 22359-24137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22620-23412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22620-2341 2 bp Feature: domain Description: Intron_maturas2 Location: 23517-23748 bp Feature: domain Description: Intron_maturas2 Location: 2351 7-23748 bp Feature: domain Description: HNHc Note: nucleases Location: 23913-24099 bp Feature: domain Description: HNHc Note: nucleases Location: 2391 3-24099 bp Feature: gene Location: 24275-24697 bp Feature: domain Description: SF2_C_SNF Location: 24518-24665 bp Feature: domain Description: SF2_C_SNF Location: 2451 8-24665 bp Feature: gene Location: 25262-27073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25526-26348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25526-26348 bp Feature: domain Description: Intron_maturas2 Location: 26417-26891 bp Feature: domain Description: Intron_maturas2 Location: 2641 7-26891 bp Feature: domain Description: HNHc Note: nucleases Location: 26891-27056 bp Feature: domain Description: HNHc Note: nucleases Location: 26891 -27056 bp Feature: gene Location: 27106-28125 bp Feature: domain Description: KOG1000 Location: 27181-27376 bp Feature: domain Description: KOG1 000 Location: 271 81 -27376 bp Feature: gene Location: 28196-28495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )