myRT

myRT report for GCA_000947435.1_Velvet_assembly

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Seq: CEGR01000001.1 Streptococcus suis genome assembly Velvet_assembly, contig NODE_1_length_89394_cov_15.634091, whole genome shotgun sequence (89454 bp)
Overview 1 RT 1: 33305-42596 bp Neighborhood of RT #1 [33305, 42604] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc SF2_C_SNF TnpV Feature: gene Location: 33305-33856 bp Feature: gene Location: 33906-39368 bp Feature: domain Description: N6_Mtase Location: 35916-36522 bp Feature: domain Description: N6_Mtase Location: 3591 6-36522 bp Feature: domain Description: COG4646 Location: 37098-39222 bp Feature: domain Description: COG4646 Location: 37098-39222 bp Feature: gene Location: 39866-41644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40127-40919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 27-4091 9 bp Feature: domain Description: Intron_maturas2 Location: 41024-41255 bp Feature: domain Description: Intron_maturas2 Location: 41 024-41 255 bp Feature: domain Description: HNHc Note: nucleases Location: 41420-41606 bp Feature: domain Description: HNHc Note: nucleases Location: 41 420-41 606 bp Feature: gene Location: 41782-42249 bp Feature: domain Description: SF2_C_SNF Location: 42025-42172 bp Feature: domain Description: SF2_C_SNF Location: 42025-421 72 bp Feature: gene Location: 42230-42604 bp Feature: domain Description: TnpV Location: 42266-42596 bp Feature: domain Description: TnpV Location: 42266-42596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793), TnpV (pfam14198)