myRT

myRT report for GCA_000948905.1_ASM94890v1

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Seq: JXWI01000006.1 (299292 bp)
Overview 1 RT 1: 183248-187130 bp Neighborhood of RT #1 [183248, 187135] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 183248-183964 bp Feature: domain Description: rph Location: 183251-183959 bp Feature: domain Description: rph Location: 1 83251 -1 83959 bp Feature: gene Location: 184015-184671 bp Feature: domain Description: pyrE Location: 184033-184666 bp Feature: domain Description: pyrE Location: 1 84033-1 84666 bp Feature: gene Location: 184969-185928 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 185104-185653 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 851 04-1 85653 bp Feature: gene Location: 185974-186570 bp Feature: domain Description: slmA Location: 185980-186556 bp Feature: domain Description: slmA Location: 1 85980-1 86556 bp Feature: gene Location: 186677-187135 bp Feature: domain Description: dut Location: 186683-187130 bp Feature: domain Description: dut Location: 1 86683-1 871 30 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JXWI01000032.1 (14430 bp)
Overview 1 RT 1: 7265-10316 bp Neighborhood of RT #1 [7265, 10441] PHA02517 RVT-GII YkfC HlyC Feature: gene Location: 7265-7684 bp Feature: domain Description: PHA02517 Location: 7268-7673 bp Feature: domain Description: PHA02 517 Location: 72 68-7673 bp Feature: gene Location: 7807-7992 bp Feature: gene Location: 8165-8977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8258-8837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 58-8837 bp Feature: gene Location: 8838-9854 bp Feature: domain Description: YkfC Location: 9534-9804 bp Feature: domain Description: YkfC Location: 9534-9804 bp Feature: gene Location: 9935-10441 bp Feature: domain Description: HlyC Location: 9956-10316 bp Feature: domain Description: HlyC Location: 9956-10316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344), HlyC (pfam02794)

Seq: JXWI01000026.1 (30488 bp)
Overview 1 RT 1: 21699-25183 bp Neighborhood of RT #1 [21699, 25183] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 21699-21851 bp Feature: gene Location: 21921-22823 bp Feature: domain Description: DUF1281 Location: 21990-22518 bp Feature: domain Description: DUF1281 Location: 21990-22518 bp Feature: domain Description: DUF1281_C Location: 22524-22764 bp Feature: domain Description: DUF1281_C Location: 22524-22764 bp Feature: gene Location: 22900-24624 bp Feature: RT Description: RVT_N Location: 22957-23194 bp Feature: RT Description: RVT_N Location: 22957-23 194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23245-23893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 245-23 893 bp Feature: domain Description: YkfC Location: 24025-24181 bp Feature: domain Description: YkfC Location: 24025-24181 bp Feature: domain Description: HNHc Note: nucleases Location: 24409-24568 bp Feature: domain Description: HNHc Note: nucleases Location: 24409-24568 bp Feature: gene Location: 24665-24805 bp Feature: gene Location: 24887-25183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)