myRT

myRT report for GCA_000948985.1_ASM94898v1

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Seq: JYNJ01000127.1 Thalassomonas viridans strain XOM25 contig_127, whole genome shotgun sequence (62266 bp)
Overview 1 RT 1: 40290-44907 bp Neighborhood of RT #1 [40290, 44990] integrase_gron RVT-GII GIIM Gmk Feature: gene Location: 40290-41246 bp Ori: KJE44103.1 Feature: domain Description: integrase_gron Location: 40308-41241 bp Feature: domain Description: integrase_gron Location: 40308-41 241 bp Feature: gene Location: 41579-42055 bp Feature: gene Location: 42132-43466 bp Ori: KJE44105.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42411-43029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4241 1 -43029 bp Feature: domain Description: GIIM Note: maturase Location: 43074-43296 bp Feature: domain Description: GIIM Note: maturase Location: 43074-43296 bp Feature: gene Location: 43599-43862 bp Feature: gene Location: 44085-44990 bp Ori: KJE44107.1 Feature: domain Description: Gmk Location: 44328-44907 bp Feature: domain Description: Gmk Location: 44328-44907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT integrase_gron (TIGR02249), RVT-GII, GIIM (pfam08388), Gmk (COG0194)

Seq: JYNJ01000034.1 Thalassomonas viridans strain XOM25 contig_34, whole genome shotgun sequence (76662 bp)
Overview 1 RT 1: 72610-75752 bp Neighborhood of RT #1 [72610, 75997] PRK14875 SnoaL_2 RVT-GII GIIM Feature: gene Location: 72610-73563 bp Ori: KJE46913.1 Feature: domain Description: PRK14875 Location: 72691-73549 bp Feature: domain Description: PRK14875 Location: 72 691-73549 bp Feature: gene Location: 73628-74008 bp Ori: KJE46914.1 Feature: domain Description: SnoaL_2 Location: 73688-73916 bp Feature: domain Description: SnoaL_2 Location: 73688-73916 bp Feature: gene Location: 74474-75997 bp Ori: KJE46915.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74747-75479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74747-75479 bp Feature: domain Description: GIIM Note: maturase Location: 75599-75752 bp Feature: domain Description: GIIM Note: maturase Location: 75599-75752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14875 (acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional), SnoaL_2 (pfam12680), RVT-GII, GIIM (pfam08388)

Seq: JYNJ01000223.1 Thalassomonas viridans strain XOM25 contig_223, whole genome shotgun sequence (8112 bp)
Overview 1 RT 1: 4313-7175 bp Neighborhood of RT #1 [4313, 7420] DUF4214 RVT-GII GIIM Feature: gene Location: 4313-4699 bp Feature: gene Location: 4912-5196 bp Ori: KJE38000.1 Feature: domain Description: DUF4214 Location: 5017-5155 bp Feature: domain Description: DUF4214 Location: 5017-5155 bp Feature: gene Location: 5897-7420 bp Ori: KJE38001.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6170-6902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6170-6902 bp Feature: domain Description: GIIM Note: maturase Location: 7016-7175 bp Feature: domain Description: GIIM Note: maturase Location: 7016-7175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4214 (pfam13946), RVT-GII, GIIM (pfam08388)

Seq: JYNJ01000140.1 Thalassomonas viridans strain XOM25 contig_140, whole genome shotgun sequence (64982 bp)
Overview 1 RT 1: 28973-38996 bp Neighborhood of RT #1 [28973, 39001] PI-PLCc_Rv2075c_like Jacalin Mucin2_WxxW RVT-Retrons sbcB Feature: gene Location: 28973-31111 bp Ori: KJE43036.1 Feature: domain Description: PI-PLCc_Rv2075c_like Location: 29090-29984 bp Feature: domain Description: PI-PLCc_Rv2075c_like Location: 29090-29984 bp Feature: domain Description: Jacalin Location: 30419-30791 bp Feature: domain Description: Jacalin Location: 304 19-30791 bp Feature: domain Description: Mucin2_WxxW Location: 30833-31088 bp Feature: domain Description: Mucin2_WxxW Location: 30833-31088 bp Feature: gene Location: 32141-33340 bp Feature: gene Location: 34181-36028 bp Ori: KJE43037.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34316-35012 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34 316-35012 bp Feature: gene Location: 36302-37246 bp Feature: gene Location: 37562-39001 bp Ori: KJE43020.1 Feature: domain Description: sbcB Note: exonuclease Location: 37577-38996 bp Feature: domain Description: sbcB Note: exonuclease Location: 37577-38996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PI-PLCc_Rv2075c_like (cd08590), Jacalin (smart00915), Mucin2_WxxW (pfam13330), RVT-Retrons, sbcB (PRK11779)

Seq: JYNJ01000060.1 Thalassomonas viridans strain XOM25 contig_60, whole genome shotgun sequence (8538 bp)
Overview 1 RT 1: 370-3825 bp Neighborhood of RT #1 [370, 3825] RVT-UG4 GltS_FMN Feature: gene Location: 370-1446 bp Ori: KJE46046.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 745-1210 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 745 -1210 bp Feature: gene Location: 1634-3268 bp Ori: KJE46047.1 Feature: domain Description: GltS_FMN Location: 1826-3083 bp Feature: domain Description: GltS_FMN Location: 1826-3083 bp Feature: gene Location: 3592-3825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, GltS_FMN (cd02808)

Seq: JYNJ01000071.1 Thalassomonas viridans strain XOM25 contig_71, whole genome shotgun sequence (96128 bp)
Overview 1 RT 1: 55907-60084 bp Neighborhood of RT #1 [55907, 60164] RVT-UG17 SLATT_5 HTH_Crp_2 Feature: gene Location: 55907-56302 bp Feature: gene Location: 56436-56930 bp Feature: gene Location: 57092-58420 bp Ori: KJE45657.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 57320-57923 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 57320-57923 bp Feature: gene Location: 58417-58986 bp Ori: KJE45658.1 Feature: domain Description: SLATT_5 Location: 58426-58939 bp Feature: domain Description: SLATT_5 Location: 58426 -58939 bp Feature: gene Location: 59430-60164 bp Ori: KJE45659.1 Feature: domain Description: HTH_Crp_2 Location: 59880-60084 bp Feature: domain Description: HTH_Crp_2 Location: 59880-6 0084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160), HTH_Crp_2 (pfam13545)