myRT

myRT report for GCA_000949255.1_FAP1

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Seq: JXUW01000018.1 Ferrimicrobium acidiphilum DSM 19497 strain T23 FEAC_contig000018, whole genome shotgun sequence (57754 bp)
Overview 1 RT 1: 401-2225 bp Neighborhood of RT #1 [401, 2359] RVT-GII DDE_Tnp_ISAZ013 GIIM Feature: gene Location: 401-730 bp Ori: KJE76288.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 9-629 bp Feature: gene Location: 748-1959 bp Ori: KJE76289.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 1030-1951 bp Feature: domain Description: DDE_Tnp_ISAZ01 3 Location: 1 030-1 951 bp Feature: gene Location: 2006-2359 bp Ori: KJE76290.1 Feature: domain Description: GIIM Note: maturase Location: 2021-2225 bp Feature: domain Description: GIIM Note: maturase Location: 2021 -2225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_ISAZ013 (pfam07592), GIIM (pfam08388)

Seq: JXUW01000021.1 Ferrimicrobium acidiphilum DSM 19497 strain T23 FEAC_contig000021, whole genome shotgun sequence (52295 bp)
Overview 1 RT 1: 50330-52123 bp Neighborhood of RT #1 [50330, 52257] PTS_HPr_family DDE_Tnp_ISL3 RVT-GII GIIM Feature: gene Location: 50330-50602 bp Ori: KJE76158.1 Gene: ptsH Feature: domain Description: PTS_HPr_family Location: 50333-50573 bp Feature: domain Description: PTS_HPr_family Location: 50333-50573 bp Feature: gene Location: 51080-51613 bp Ori: KJE76159.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 51089-51536 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 51089-51536 bp Feature: gene Location: 51733-52257 bp Ori: KJE76160.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51739-51823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51739-5182 3 bp Feature: domain Description: GIIM Note: maturase Location: 51895-52123 bp Feature: domain Description: GIIM Note: maturase Location: 51895-52 12 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTS_HPr_family (TIGR01003), DDE_Tnp_ISL3 (pfam01610), RVT-GII, GIIM (pfam08388)

Seq: JXUW01000054.1 Ferrimicrobium acidiphilum DSM 19497 strain T23 FEAC_contig000054, whole genome shotgun sequence (8968 bp)
Overview 1 RT 1: 482-3935 bp Neighborhood of RT #1 [482, 4003] DDE_Tnp_ISL3 RVT-GII GIIM DDE_Tnp_ISL3 DDE_Tnp_ISL3 Feature: gene Location: 482-877 bp Ori: KJE75238.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 542-812 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 542-812 bp Feature: gene Location: 852-1409 bp Feature: gene Location: 1406-2770 bp Ori: KJE75240.1 Gene: ltrA6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1721-2405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1721-2405 bp Feature: domain Description: GIIM Note: maturase Location: 2477-2684 bp Feature: domain Description: GIIM Note: maturase Location: 2477-2684 bp Feature: gene Location: 2958-3491 bp Ori: KJE75241.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 2967-3414 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 2967-3 414 bp Feature: gene Location: 3488-4003 bp Ori: KJE75242.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 3503-3935 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3 503 -3 93 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), RVT-GII, GIIM (pfam08388)

Seq: JXUW01000006.1 Ferrimicrobium acidiphilum DSM 19497 strain T23 FEAC_contig000006, whole genome shotgun sequence (142111 bp)
Overview 1 RT 1: 49007-57360 bp Neighborhood of RT #1 [49007, 57980] GT2_RfbC_Mx_like GT_2_like_c RVT-GII GT2_RfbC_Mx_like GT2_RfbC_Mx_like GT_2_like_b Feature: gene Location: 49007-51382 bp Ori: KJE77238.1 Gene: hyaD1 Feature: domain Description: GT2_RfbC_Mx_like Location: 49382-49982 bp Feature: domain Description: GT2_RfbC_Mx_like Location: 4 9382-4 9982 bp Feature: domain Description: GT_2_like_c Location: 50309-50786 bp Feature: domain Description: GT_2_like_c Location: 50309-50786 bp Feature: gene Location: 51954-52286 bp Feature: gene Location: 52288-53757 bp Ori: KJE77240.1 Gene: ltrA1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52696-53386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52696-53386 bp Feature: gene Location: 53972-54133 bp Feature: gene Location: 54258-57980 bp Ori: KJE77242.1 Feature: domain Description: GT2_RfbC_Mx_like Location: 55920-56517 bp Feature: domain Description: GT2_RfbC_Mx_like Location: 55920-56517 bp Feature: domain Description: GT2_RfbC_Mx_like Location: 56673-56949 bp Feature: domain Description: GT2_RfbC_Mx_like Location: 56673-5694 9 bp Feature: domain Description: GT_2_like_b Location: 57171-57360 bp Feature: domain Description: GT_2_like_b Location: 57171-57360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT2_RfbC_Mx_like (cd04184), GT_2_like_c (cd04186), RVT-GII, GT_2_like_b (cd04185)

Seq: JXUW01000052.1 Ferrimicrobium acidiphilum DSM 19497 strain T23 FEAC_contig000052, whole genome shotgun sequence (9549 bp)
Overview 1 RT 1: 3457-9258 bp Neighborhood of RT #1 [3457, 9290] DDE_Tnp_ISL3 RVT-GII Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII Feature: gene Location: 3457-3864 bp Ori: KJE75267.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 3517-3787 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 35 17-3787 bp Feature: gene Location: 3828-4385 bp Feature: gene Location: 4382-5116 bp Ori: KJE75269.1 Gene: ltrA4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4697-5084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4697-5 084 bp Feature: gene Location: 5258-6490 bp Ori: KJE75270.1 Gene: xerD2 Feature: domain Description: Phage_int_SAM_1 Location: 5627-5843 bp Feature: domain Description: Phage_int_SAM_1 Location: 5 627-5 843 bp Feature: domain Description: INT_RitA_C_like Location: 5924-6464 bp Feature: domain Description: INT_RitA_C_like Location: 5 924-6464 bp Feature: gene Location: 6487-7473 bp Ori: KJE75271.1 Gene: xerD3 Feature: domain Description: INT_RitB_C_like Location: 6823-7408 bp Feature: domain Description: INT_RitB_C_like Location: 6823-7408 bp Feature: gene Location: 7460-8470 bp Ori: KJE75272.1 Gene: xerC7 Feature: domain Description: Phage_int_SAM_1 Location: 7511-7748 bp Feature: domain Description: Phage_int_SAM_1 Location: 75 11-7748 bp Feature: domain Description: INT_RitC_C_like Location: 7841-8393 bp Feature: domain Description: INT_RitC_C_like Location: 7841-8393 bp Feature: gene Location: 8556-9290 bp Ori: KJE75273.1 Gene: ltrA5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8871-9258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8871-925 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), INT_RitC_C_like (cd01182)

Seq: JXUW01000048.1 Ferrimicrobium acidiphilum DSM 19497 strain T23 FEAC_contig000048, whole genome shotgun sequence (15140 bp)
Overview 1 RT 1: 13084-14685 bp Neighborhood of RT #1 [13084, 14819] yhaH DDE_Tnp_ISL3 RVT-GII GIIM Feature: gene Location: 13084-13455 bp Ori: KJE75334.1 Gene: yhaH Feature: domain Description: yhaH Location: 13102-13432 bp Feature: domain Description: yhaH Location: 13102-13432 bp Feature: gene Location: 13504-14127 bp Ori: KJE75335.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 13603-14050 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 136 03-14050 bp Feature: gene Location: 14157-14819 bp Ori: KJE75336.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14175-14385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14175-14385 bp Feature: domain Description: GIIM Note: maturase Location: 14457-14685 bp Feature: domain Description: GIIM Note: maturase Location: 14457-146 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT yhaH (COG3152), DDE_Tnp_ISL3 (pfam01610), RVT-GII, GIIM (pfam08388)

Seq: JXUW01000032.1 Ferrimicrobium acidiphilum DSM 19497 strain T23 FEAC_contig000032, whole genome shotgun sequence (31021 bp)
Overview 1 RT 1: 28050-30061 bp Neighborhood of RT #1 [28050, 30072] HTH_ARSR RVT-GII RVT-CRISPR-like Feature: gene Location: 28050-28346 bp Ori: KJE75691.1 Feature: domain Description: HTH_ARSR Location: 28110-28284 bp Feature: domain Description: HTH_ARSR Location: 28110-28284 bp Feature: gene Location: 28821-29264 bp Feature: gene Location: 29311-29814 bp Ori: KJE75693.1 Gene: ltrA2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29638-29785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29638-297 85 bp Feature: gene Location: 29836-30072 bp Ori: KJE75694.1 Gene: ltrA3 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 29845-30061 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 29845-30061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), RVT-GII, RVT-CRISPR

Seq: JXUW01000020.1 Ferrimicrobium acidiphilum DSM 19497 strain T23 FEAC_contig000020, whole genome shotgun sequence (53790 bp)
Overview 1 RT 1: 33041-37478 bp Neighborhood of RT #1 [33041, 37537] DUF4157 RVT-GII GIIM DUF262 Feature: gene Location: 33041-33268 bp Feature: gene Location: 33808-35382 bp Ori: KJE76204.1 Feature: domain Description: DUF4157 Location: 34240-34462 bp Feature: domain Description: DUF4157 Location: 34240-34462 bp Feature: gene Location: 35949-36416 bp Ori: KJE76205.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35961-36078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35961-36078 bp Feature: domain Description: GIIM Note: maturase Location: 36162-36372 bp Feature: domain Description: GIIM Note: maturase Location: 36162-36372 bp Feature: gene Location: 36736-36951 bp Feature: gene Location: 37163-37537 bp Ori: KJE76207.1 Feature: domain Description: DUF262 Location: 37310-37478 bp Feature: domain Description: DUF262 Location: 37310-37478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4157 (pfam13699), RVT-GII, GIIM (pfam08388), DUF262 (pfam03235)