myRT

myRT report for GCA_000949295.1_ASM94929v1

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Seq: JXYS01000006.1 Acidithrix ferrooxidans strain Py-F3 AXFE_contig000006, whole genome shotgun sequence (10825 bp)
Overview 1 RT 1: 7465-10551 bp Neighborhood of RT #1 [7465, 10706] HTH_23 RVT-GII RVT-GII GIIM Tra5 Feature: gene Location: 7465-7737 bp Feature: gene Location: 7734-7925 bp Ori: KJF18789.1 Feature: domain Description: HTH_23 Location: 7764-7851 bp Feature: domain Description: HTH_23 Location: 7764-7851 bp Feature: gene Location: 8065-8706 bp Ori: KJF18790.1 Gene: ltrA3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8263-8653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8263-8653 bp Feature: gene Location: 9422-10009 bp Ori: KJF18791.1 Gene: ltrA4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9440-9563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9440-9563 bp Feature: domain Description: GIIM Note: maturase Location: 9644-9848 bp Feature: domain Description: GIIM Note: maturase Location: 9644-9848 bp Feature: gene Location: 10167-10706 bp Ori: KJF18792.1 Feature: domain Description: Tra5 Location: 10170-10551 bp Feature: domain Description: Tra5 Location: 1 01 70-1 0551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: JXYS01000053.1 Acidithrix ferrooxidans strain Py-F3 AXFE_contig000053, whole genome shotgun sequence (15586 bp)
Overview 1 RT 1: 14374-14980 bp Neighborhood of RT #1 [14374, 14980] RVT-GII Feature: gene Location: 14374-14652 bp Ori: KJF17319.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14560-14644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14560-14644 bp Feature: gene Location: 14756-14980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JXYS01000099.1 Acidithrix ferrooxidans strain Py-F3 AXFE_contig000099, whole genome shotgun sequence (25863 bp)
Overview 1 RT 1: 19493-25454 bp Neighborhood of RT #1 [19493, 25615] PAS GGDEF EAL RVT-GII GIIM Feature: gene Location: 19493-22255 bp Ori: KJF16112.1 Gene: gmr7 Feature: domain Description: PAS Location: 20558-20864 bp Feature: domain Description: PAS Location: 20558-20864 bp Feature: domain Description: GGDEF Location: 20873-21395 bp Feature: domain Description: GGDEF Location: 20873 -213 95 bp Feature: domain Description: EAL Location: 21461-22211 bp Feature: domain Description: EAL Location: 21461-22211 bp Feature: gene Location: 23630-24220 bp Feature: gene Location: 25028-25615 bp Ori: KJF16114.1 Gene: ltrA7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25046-25169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25046-25169 bp Feature: domain Description: GIIM Note: maturase Location: 25250-25454 bp Feature: domain Description: GIIM Note: maturase Location: 25250-25454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS (smart00091), GGDEF (TIGR00254), EAL (smart00052), RVT-GII, GIIM (pfam08388)

Seq: JXYS01000131.1 Acidithrix ferrooxidans strain Py-F3 AXFE_contig000131, whole genome shotgun sequence (8559 bp)
Overview 1 RT 1: 5431-8462 bp Neighborhood of RT #1 [5431, 8494] Phage_int_SAM_1 INT_RitC_C_like PHA02517 RVT-GII RVT-GII HNH Feature: gene Location: 5431-6471 bp Ori: KJF15714.1 Gene: xerD3 Feature: domain Description: Phage_int_SAM_1 Location: 5500-5743 bp Feature: domain Description: Phage_int_SAM_1 Location: 5500-574 3 bp Feature: domain Description: INT_RitC_C_like Location: 5827-6394 bp Feature: domain Description: INT_RitC_C_like Location: 5827-6394 bp Feature: gene Location: 6662-6889 bp Ori: KJF15715.1 Feature: domain Description: PHA02517 Location: 6668-6875 bp Feature: domain Description: PHA02517 Location: 6668-6875 bp Feature: gene Location: 7235-7537 bp Ori: KJF15716.1 Gene: ltrA8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7238-7523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7238-7523 bp Feature: gene Location: 7500-7958 bp Ori: KJF15717.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7515-7815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7515-7815 bp Feature: gene Location: 8036-8494 bp Ori: KJF15718.1 Feature: domain Description: HNH Note: nucleases Location: 8357-8462 bp Feature: domain Description: HNH Note: nucleases Location: 8357-84 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, HNH (pfam01844)

Seq: JXYS01000151.1 Acidithrix ferrooxidans strain Py-F3 AXFE_contig000151, whole genome shotgun sequence (3532 bp)
Overview 1 RT 1: 590-2455 bp Neighborhood of RT #1 [590, 2649] RVT-GII Tra5 Feature: gene Location: 590-961 bp Ori: KJF15521.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815 -935 bp Feature: gene Location: 1001-1522 bp Feature: gene Location: 1582-2649 bp Ori: KJF15523.1 Feature: domain Description: Tra5 Location: 1879-2455 bp Feature: domain Description: Tra5 Location: 1879-245 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Tra5 (COG2801)

Seq: JXYS01000003.1 Acidithrix ferrooxidans strain Py-F3 AXFE_contig000003, whole genome shotgun sequence (64243 bp)
Overview 1 RT 1: 1532-5797 bp Neighborhood of RT #1 [1532, 5797] DDE_Tnp_IS1595 AcrR RVT-GII RVT-GII Feature: gene Location: 1532-1858 bp Ori: KJF18883.1 Feature: domain Description: DDE_Tnp_IS1595 Location: 1553-1739 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 1553-1739 bp Feature: gene Location: 2716-3354 bp Ori: KJF18884.1 Gene: fabR Feature: domain Description: AcrR Location: 2758-3343 bp Feature: domain Description: AcrR Location: 2758-3343 bp Feature: gene Location: 3626-4021 bp Ori: KJF18885.1 Gene: ltrA1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3674-3992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 74-3992 bp Feature: gene Location: 4375-5265 bp Ori: KJF18886.1 Gene: ltrA2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4381-4873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4381-4873 bp Feature: gene Location: 5322-5597 bp Feature: gene Location: 5594-5797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1595 (pfam12762), AcrR (COG1309), RVT-GII

Seq: JXYS01000161.1 Acidithrix ferrooxidans strain Py-F3 AXFE_contig000161, whole genome shotgun sequence (2219 bp)
Overview 1 RT 1: 30-2043 bp Neighborhood of RT #1 [30, 2132] RVT-GII RVT-GII GIIM Feature: gene Location: 30-653 bp Ori: KJF15473.1 Gene: ltrA9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228-618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228-618 bp Feature: gene Location: 688-807 bp Feature: gene Location: 1509-2132 bp Ori: KJF15475.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1527-1734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1527 -17 34 bp Feature: domain Description: GIIM Note: maturase Location: 1815-2043 bp Feature: domain Description: GIIM Note: maturase Location: 1815-2043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JXYS01000050.1 Acidithrix ferrooxidans strain Py-F3 AXFE_contig000050, whole genome shotgun sequence (2478 bp)
Overview 1 RT 1: 682-2327 bp Neighborhood of RT #1 [682, 2416] DDE_Tnp_ISL3 RVT-GII GIIM Feature: gene Location: 682-1095 bp Ori: KJF17341.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 691-1084 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 691-108 4 bp Feature: gene Location: 1245-1502 bp Feature: gene Location: 1793-2416 bp Ori: KJF17343.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1811-2018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18 11-2018 bp Feature: domain Description: GIIM Note: maturase Location: 2099-2327 bp Feature: domain Description: GIIM Note: maturase Location: 2099-2327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), RVT-GII, GIIM (pfam08388)

Seq: JXYS01000009.1 Acidithrix ferrooxidans strain Py-F3 AXFE_contig000009, whole genome shotgun sequence (24790 bp)
Overview 1 RT 1: 17-2983 bp Neighborhood of RT #1 [17, 2997] DDE_3 RVT-GII GIIM RVT-GII PHA02517 Feature: gene Location: 17-481 bp Ori: KJF18677.1 Feature: domain Description: DDE_3 Location: 113-422 bp Feature: domain Description: DDE_3 Location: 113-422 bp Feature: gene Location: 1170-1613 bp Ori: KJF18678.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1206-1401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1206-1401 bp Feature: domain Description: GIIM Note: maturase Location: 1455-1608 bp Feature: domain Description: GIIM Note: maturase Location: 1455-1608 bp Feature: gene Location: 1660-1962 bp Ori: KJF18679.1 Gene: ltrA5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1663-1948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1663-19 48 bp Feature: gene Location: 1955-2122 bp Feature: gene Location: 2128-2997 bp Ori: KJF18681.1 Feature: domain Description: PHA02517 Location: 2179-2983 bp Feature: domain Description: PHA02517 Location: 2179 -29 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JXYS01000168.1 Acidithrix ferrooxidans strain Py-F3 AXFE_contig000168, whole genome shotgun sequence (1307 bp)
Overview 1 RT 1: 267-749 bp Neighborhood of RT #1 [267, 784] RVT-GII Feature: gene Location: 267-428 bp Feature: gene Location: 566-784 bp Ori: KJF15464.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569-749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569-749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JXYS01000096.1 Acidithrix ferrooxidans strain Py-F3 AXFE_contig000096, whole genome shotgun sequence (25773 bp)
Overview 1 RT 1: 22735-24450 bp Neighborhood of RT #1 [22735, 24488] InsE RVT-GII Feature: gene Location: 22735-23007 bp Ori: KJF16163.1 Feature: domain Description: InsE Location: 22765-22987 bp Feature: domain Description: InsE Location: 22765-22987 bp Feature: gene Location: 23164-23634 bp Feature: gene Location: 23619-24488 bp Ori: KJF16165.1 Gene: ltrA6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23850-24450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23850-24450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII