myRT

myRT report for GCA_000949635.1_ASM94963v1

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Seq: BAFN01000001.1 Candidatus Brocadia sinica JPN1 DNA, contig: brosiA, whole genome shotgun sequence (4034580 bp)
Overview 1 RT 1: 292539-296860 bp 2 RT 2: 991102-997123 bp 3 RT 3: 2917365-2921454 bp 4 RT 4: 3163132-3169063 bp 5 RT 5: 3350040-3354563 bp 6 RT 6: 3445956-3449433 bp 7 RT 7: 3962117-3965607 bp Neighborhood of RT #1 [292539, 296997] RVT-CRISPR-like GxxExxY zf-IS66 DDE_Tnp_IS66 Neighborhood of RT #2 [991102, 997170] porA RVT-GII GIIM GIIM Uup ABC_tran_CTD Neighborhood of RT #3 [2917365, 2921534] PemK_toxin arc_metj RVT-GII GIIM PemK_toxin ComGF HD_3 Neighborhood of RT #4 [3163132, 3169063] TAT_signal COG2006 GIIM RVT-GII GIIM RVT-GII RVT-GII LexA_DNA_bind Neighborhood of RT #5 [3350040, 3354685] KOG1263 GIIM RVT-GII DDE_Tnp_1_4 DDE_Tnp_1_4 Neighborhood of RT #6 [3445956, 3449489] CBS_pair_BON_assoc TsaA RVT-GII GIIM TsaA PadR Neighborhood of RT #7 [3962117, 3965607] Cas1_I-II-III RVT-CRISPR Cas1_I-II-III CRISPR_Cas6 Feature: gene Location: 292539-293438 bp Feature: gene Location: 293450-294229 bp Feature: gene Location: 294229-295173 bp Ori: GAN31767.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 294418-295015 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 29441 8-29501 5 bp Feature: gene Location: 295173-295535 bp Ori: GAN31768.1 Feature: domain Description: GxxExxY Location: 295185-295527 bp Feature: domain Description: GxxExxY Location: 2951 85-295527 bp Feature: gene Location: 295627-296997 bp Ori: GAN31769.1 Feature: domain Description: zf-IS66 Location: 295891-296020 bp Feature: domain Description: zf-IS66 Location: 295891 -296020 bp Feature: domain Description: DDE_Tnp_IS66 Location: 296074-296860 bp Feature: domain Description: DDE_Tnp_IS66 Location: 296074-296860 bp Feature: gene Location: 991102-992328 bp Ori: GAN32411.1 Feature: domain Description: porA Location: 991117-992230 bp Feature: domain Description: porA Location: 991 1 1 7-992230 bp Feature: gene Location: 992421-992546 bp Feature: gene Location: 992795-994156 bp Ori: GAN32413.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 993140-993779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9931 40-993779 bp Feature: domain Description: GIIM Note: maturase Location: 993860-994070 bp Feature: domain Description: GIIM Note: maturase Location: 993860-994070 bp Feature: gene Location: 994411-994845 bp Ori: GAN32414.1 Feature: domain Description: GIIM Note: maturase Location: 994606-994768 bp Feature: domain Description: GIIM Note: maturase Location: 994606-994768 bp Feature: gene Location: 995215-997170 bp Ori: GAN32415.1 Feature: domain Description: Uup Location: 995218-996814 bp Feature: domain Description: Uup Location: 99521 8-99681 4 bp Feature: domain Description: ABC_tran_CTD Location: 996940-997123 bp Feature: domain Description: ABC_tran_CTD Location: 996940-9971 23 bp Feature: gene Location: 2917365-2917709 bp Ori: GAN34243.1 Feature: domain Description: PemK_toxin Location: 2917383-2917695 bp Feature: domain Description: PemK_toxin Location: 291 7383-291 7695 bp Feature: gene Location: 2917702-2917977 bp Ori: GAN34244.1 Feature: domain Description: arc_metj Location: 2917732-2917849 bp Feature: domain Description: arc_metj Location: 291 7732-291 7849 bp Feature: gene Location: 2918528-2919145 bp Ori: GAN34245.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2918543-2918768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 8543-291 8768 bp Feature: domain Description: GIIM Note: maturase Location: 2918840-2919059 bp Feature: domain Description: GIIM Note: maturase Location: 291 8840-291 9059 bp Feature: gene Location: 2919917-2920162 bp Ori: GAN34246.1 Feature: domain Description: PemK_toxin Location: 2919956-2920145 bp Feature: domain Description: PemK_toxin Location: 291 9956-29201 45 bp Feature: gene Location: 2920347-2921534 bp Ori: GAN34247.1 Feature: domain Description: ComGF Location: 2920368-2920857 bp Feature: domain Description: ComGF Location: 2920368-2920857 bp Feature: domain Description: HD_3 Location: 2920929-2921454 bp Feature: domain Description: HD_3 Location: 2920929-2921 454 bp Feature: gene Location: 3163132-3164124 bp Ori: GAN34483.1 Feature: domain Description: TAT_signal Location: 3163150-3163198 bp Feature: domain Description: TAT_signal Location: 31 631 50-31 631 98 bp Feature: domain Description: COG2006 Location: 3163330-3164089 bp Feature: domain Description: COG2006 Location: 31 63330-31 64089 bp Feature: gene Location: 3164518-3164952 bp Ori: GAN34484.1 Feature: domain Description: GIIM Note: maturase Location: 3164713-3164875 bp Feature: domain Description: GIIM Note: maturase Location: 31 6471 3-31 64875 bp Feature: gene Location: 3165268-3166569 bp Ori: GAN34485.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3165553-3166192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 65553-31 661 92 bp Feature: domain Description: GIIM Note: maturase Location: 3166273-3166483 bp Feature: domain Description: GIIM Note: maturase Location: 31 66273-31 66483 bp Feature: gene Location: 3166683-3167276 bp Ori: GAN34486.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3166686-3167103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 66686-31 671 03 bp Feature: gene Location: 3167261-3167689 bp Ori: GAN34487.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3167474-3167666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 67474-31 67666 bp Feature: gene Location: 3168473-3168736 bp Ori: GAN34488.1 Feature: domain Description: LexA_DNA_bind Location: 3168509-3168689 bp Feature: domain Description: LexA_DNA_bind Location: 31 68509-31 68689 bp Feature: gene Location: 3168908-3169063 bp Feature: gene Location: 3350040-3351266 bp Ori: GAN34678.1 Feature: domain Description: KOG1263 Location: 3350382-3351108 bp Feature: domain Description: KOG1 263 Location: 3350382-3351 1 08 bp Feature: gene Location: 3351674-3351967 bp Ori: GAN34679.1 Feature: domain Description: GIIM Note: maturase Location: 3351680-3351890 bp Feature: domain Description: GIIM Note: maturase Location: 3351 680-3351 890 bp Feature: gene Location: 3351967-3352953 bp Ori: GAN34680.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3352270-3352891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3352270-3352891 bp Feature: gene Location: 3353813-3354022 bp Feature: gene Location: 3354062-3354685 bp Ori: GAN34682.1 Feature: domain Description: DDE_Tnp_1_4 Location: 3354086-3354350 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 3354086-3354350 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3354425-3354563 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 3354425-3354563 bp Feature: gene Location: 3445956-3446411 bp Ori: GAN34771.1 Feature: domain Description: CBS_pair_BON_assoc Location: 3445977-3446382 bp Feature: domain Description: CBS_pair_BON_assoc Location: 3445977-3446382 bp Feature: gene Location: 3446429-3446593 bp Ori: GAN34772.1 Feature: domain Description: TsaA Location: 3446432-3446582 bp Feature: domain Description: TsaA Location: 3446432-3446582 bp Feature: gene Location: 3447203-3448504 bp Ori: GAN34773.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3447488-3448127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3447488-34481 27 bp Feature: domain Description: GIIM Note: maturase Location: 3448208-3448418 bp Feature: domain Description: GIIM Note: maturase Location: 3448208-344841 8 bp Feature: gene Location: 3448618-3448863 bp Ori: GAN34774.1 Feature: domain Description: TsaA Location: 3448621-3448804 bp Feature: domain Description: TsaA Location: 3448621 -3448804 bp Feature: gene Location: 3449166-3449489 bp Ori: GAN34775.1 Feature: domain Description: PadR Location: 3449229-3449433 bp Feature: domain Description: PadR Location: 3449229-3449433 bp Feature: gene Location: 3962117-3962245 bp Feature: gene Location: 3962153-3962701 bp Ori: GAN35304.1 Feature: domain Description: Cas1_I-II-III Location: 3962162-3962654 bp Feature: domain Description: Cas1 _I-II-III Location: 39621 62-3962654 bp Feature: gene Location: 3962874-3963866 bp Ori: GAN35305.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3962880-3963540 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3962880-3963540 bp Feature: domain Description: Cas1_I-II-III Location: 3963621-3963855 bp Feature: domain Description: Cas1 _I-II-III Location: 3963621 -3963855 bp Feature: gene Location: 3963890-3964690 bp Ori: GAN35306.1 Feature: domain Description: CRISPR_Cas6 Location: 3964298-3964637 bp Feature: domain Description: CRISPR_Cas6 Location: 3964298-3964637 bp Feature: gene Location: 3965422-3965607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GxxExxY (TIGR04256), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), porA (PRK09622), RVT-GII, GIIM (pfam08388), Uup (COG0488), ABC_tran_CTD (pfam16326), PemK_toxin (pfam02452)
arc_metj (LOAD_arc_metj), ComGF (pfam15980), HD_3 (pfam13023), TAT_signal (pfam10518), COG2006 (Uncharacterized conserved protein, DUF362 family ), LexA_DNA_bind (pfam01726), KOG1263 (KOG1263, Multicopper oxidases ), DDE_Tnp_1_4 (pfam13701), CBS_pair_BON_assoc (cd04586), TsaA (COG1720)
PadR (pfam03551), Cas1_I-II-III (cl00656), CRISPR_Cas6 (pfam10040)