myRT

myRT report for GCA_000950415.1_CFSAN029437_01.0

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Seq: JZSK01000015.1 Photobacterium leiognathi strain ATCC 25521 CFSAN029437_contig0014, whole genome shotgun sequence (90826 bp)
Overview 1 RT 1: 45388-53211 bp Neighborhood of RT #1 [45388, 53228] EmrA Nudix_Hydrolase_30 RVT-GII GIIM GlcD GlpC LysR Feature: gene Location: 45388-46437 bp Ori: KJF90139.1 Feature: domain Description: EmrA Location: 45457-46423 bp Feature: domain Description: EmrA Location: 45457-46423 bp Feature: gene Location: 46520-46969 bp Ori: KJF90140.1 Feature: domain Description: Nudix_Hydrolase_30 Location: 46532-46907 bp Feature: domain Description: Nudix_Hydrolase_30 Location: 46532-46907 bp Feature: gene Location: 47302-48585 bp Ori: KJF90141.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47515-48136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4751 5-481 36 bp Feature: domain Description: GIIM Note: maturase Location: 48184-48406 bp Feature: domain Description: GIIM Note: maturase Location: 481 84-48406 bp Feature: gene Location: 49367-52192 bp Ori: KJF90142.1 Feature: domain Description: GlcD Location: 49403-50933 bp Feature: domain Description: GlcD Location: 49403-50933 bp Feature: domain Description: GlpC Location: 50984-52151 bp Feature: domain Description: GlpC Location: 50984-521 51 bp Feature: gene Location: 52323-53228 bp Ori: KJF90143.1 Feature: domain Description: LysR Location: 52338-53211 bp Feature: domain Description: LysR Location: 52338-5321 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EmrA (COG1566), Nudix_Hydrolase_30 (cd04689), RVT-GII, GIIM (pfam08388), GlcD (COG0277), GlpC (COG0247), LysR (COG0583)

Seq: JZSK01000041.1 Photobacterium leiognathi strain ATCC 25521 CFSAN029437_contig0040, whole genome shotgun sequence (39167 bp)
Overview 1 RT 1: 22924-26474 bp Neighborhood of RT #1 [22924, 26474] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 22924-24612 bp Ori: KJF88408.1 Feature: domain Description: RVT_N Location: 22975-23218 bp Feature: domain Description: RVT_N Location: 2 2 975-2 32 18 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23263-23908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 63-2 3908 bp Feature: domain Description: GIIM Note: maturase Location: 23959-24193 bp Feature: domain Description: GIIM Note: maturase Location: 2 3959-2 4193 bp Feature: domain Description: HNHc Note: nucleases Location: 24409-24571 bp Feature: domain Description: HNHc Note: nucleases Location: 2 4409-2 4571 bp Feature: gene Location: 24649-24951 bp Feature: gene Location: 26025-26474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JZSK01000026.1 Photobacterium leiognathi strain ATCC 25521 CFSAN029437_contig0025, whole genome shotgun sequence (54775 bp)
Overview 1 RT 1: 20442-30732 bp Neighborhood of RT #1 [20442, 30743] FadB LytTR RVT-UG2 glpT glpQ Feature: gene Location: 20442-21371 bp Ori: KJF89428.1 Feature: domain Description: FadB Location: 20457-21318 bp Feature: domain Description: FadB Location: 20457-213 18 bp Feature: gene Location: 23144-24130 bp Ori: KJF89429.1 Feature: domain Description: LytTR Location: 23843-23990 bp Feature: domain Description: LytTR Location: 23 843 -23 990 bp Feature: gene Location: 25059-26342 bp Ori: KJF89430.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 25263-26046 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 25263 -26046 bp Feature: gene Location: 28260-29627 bp Ori: KJF89431.1 Gene: glpT Feature: domain Description: glpT Location: 28263-29610 bp Feature: domain Description: glpT Location: 28263 -29610 bp Feature: gene Location: 29676-30743 bp Ori: KJF89432.1 Feature: domain Description: glpQ Location: 29685-30732 bp Feature: domain Description: glpQ Location: 29685-3 073 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FadB (TIGR02437), LytTR (smart00850), RVT-UG2, glpT (TIGR00712), glpQ (PRK11143)