myRT

myRT report for GCA_000950725.1_ASM95072v1

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Seq: JYJZ01000003.1 Pseudomonas aeruginosa strain FRD1 contig_03_scaffold01, whole genome shotgun sequence (1462822 bp)
Overview 1 RT 1: 16571-20950 bp 2 RT 2: 1424241-1433369 bp Neighborhood of RT #1 [16571, 20950] ABC_phnC DUF772 RVT-GII GIIM Neighborhood of RT #2 [1424241, 1434424] YeeA AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 16571-17398 bp Feature: domain Description: ABC_phnC Location: 16601-17315 bp Feature: domain Description: ABC_phnC Location: 1 6601 -1 731 5 bp Feature: gene Location: 17741-18382 bp Feature: domain Description: DUF772 Location: 17891-18086 bp Feature: domain Description: DUF772 Location: 1 7891 -1 8086 bp Feature: gene Location: 18771-20039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18984-19641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8984-1 9641 bp Feature: domain Description: GIIM Note: maturase Location: 19719-19941 bp Feature: domain Description: GIIM Note: maturase Location: 1 971 9-1 9941 bp Feature: gene Location: 20189-20587 bp Feature: gene Location: 20771-20950 bp Feature: gene Location: 1424241-1426061 bp Feature: domain Description: YeeA Location: 1424823-1425828 bp Feature: domain Description: YeeA Location: 1 424823-1 425828 bp Feature: gene Location: 1426058-1427197 bp Feature: domain Description: AAA_21 Location: 1426130-1426199 bp Feature: domain Description: AAA_21 Location: 1 4261 30-1 4261 99 bp Feature: domain Description: AAA_21 Location: 1426673-1427003 bp Feature: domain Description: AAA_21 Location: 1 426673-1 427003 bp Feature: gene Location: 1427751-1430771 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1428246-1428717 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 428246-1 42871 7 bp Feature: gene Location: 1430768-1432549 bp Feature: domain Description: YeeA Location: 1431635-1432415 bp Feature: domain Description: YeeA Location: 1 431 635-1 43241 5 bp Feature: gene Location: 1432553-1434424 bp Feature: domain Description: DUF262 Location: 1432601-1433369 bp Feature: domain Description: DUF262 Location: 1 432601 -1 433369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), YeeA (COG1002), AAA_21 (pfam13304), RVT-UG5, DUF262 (pfam03235)

Seq: JYJZ01000010.1 Pseudomonas aeruginosa strain FRD1 contig_10_scaffold04, whole genome shotgun sequence (479869 bp)
Overview 1 RT 1: 394554-405287 bp 2 RT 2: 421545-430365 bp Neighborhood of RT #1 [394554, 405289] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [421545, 430394] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 394554-394769 bp Feature: domain Description: NERD Location: 394581-394704 bp Feature: domain Description: NERD Location: 394581-394704 bp Feature: gene Location: 394982-396103 bp Feature: domain Description: COG3177 Location: 395000-396092 bp Feature: domain Description: COG3177 Location: 395000-396092 bp Feature: gene Location: 396826-398511 bp Feature: domain Description: RVT_N Location: 396883-397123 bp Feature: domain Description: RVT_N Location: 396883-39712 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397171-397807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397171-397807 bp Feature: domain Description: GIIM Note: maturase Location: 397861-398092 bp Feature: domain Description: GIIM Note: maturase Location: 397861-398092 bp Feature: domain Description: HNH Note: nucleases Location: 398344-398482 bp Feature: domain Description: HNH Note: nucleases Location: 398344-398482 bp Feature: gene Location: 399592-403329 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 399700-400357 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 399700-400357 bp Feature: domain Description: PRK09776 Location: 400570-401041 bp Feature: domain Description: PRK09776 Location: 400570-401041 bp Feature: domain Description: PAS Location: 401098-401623 bp Feature: domain Description: PAS Location: 401098-40162 3 bp Feature: domain Description: PRK10060 Location: 401635-403279 bp Feature: domain Description: PRK10060 Location: 401635-4032 79 bp Feature: gene Location: 403436-405289 bp Feature: domain Description: PRK05658 Location: 403448-405287 bp Feature: domain Description: PRK05658 Location: 403448-4052 87 bp Feature: gene Location: 421545-422759 bp Feature: domain Description: PRK10770 Location: 421557-422751 bp Feature: domain Description: PRK10770 Location: 42 1557-42 2 751 bp Feature: gene Location: 422818-425589 bp Feature: domain Description: LptD Location: 423013-425575 bp Feature: domain Description: LptD Location: 42 3013-42 5575 bp Feature: gene Location: 425722-427434 bp Feature: domain Description: RVT_N Location: 425779-426022 bp Feature: domain Description: RVT_N Location: 42 5779-42 602 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426067-426703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 6067-42 6703 bp Feature: domain Description: YkfC Location: 426913-427063 bp Feature: domain Description: YkfC Location: 42 6913-42 7063 bp Feature: domain Description: HNH Note: nucleases Location: 427240-427378 bp Feature: domain Description: HNH Note: nucleases Location: 42 72 40-42 7378 bp Feature: gene Location: 428707-429723 bp Feature: domain Description: COG3178 Location: 428710-429709 bp Feature: domain Description: COG3178 Location: 42 8710-42 9709 bp Feature: gene Location: 429720-430394 bp Feature: domain Description: NTP_transferase_like_1 Location: 429726-430365 bp Feature: domain Description: NTP_transferase_like_1 Location: 42 972 6-430365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)