myRT

myRT report for GCA_000951815.1_ASM95181v1

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Seq: KN985989.1 Enterococcus faecium strain E31 genomic scaffold 1, whole genome shotgun sequence (2921963 bp)
Overview 1 RT 1: 1019126-1024979 bp 2 RT 2: 1289877-1302622 bp Neighborhood of RT #1 [1019126, 1025098] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Neighborhood of RT #2 [1289877, 1302622] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 1019126-1020820 bp Feature: domain Description: VirB4 Location: 1019444-1020128 bp Feature: domain Description: VirB4 Location: 1 01 9444-1 0201 28 bp Feature: gene Location: 1021088-1021321 bp Feature: gene Location: 1021508-1023385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1021823-1022561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 021 823-1 022561 bp Feature: domain Description: HNHc Note: nucleases Location: 1023119-1023272 bp Feature: domain Description: HNHc Note: nucleases Location: 1 0231 1 9-1 023272 bp Feature: gene Location: 1023573-1023893 bp Feature: gene Location: 1023893-1025098 bp Feature: domain Description: Glucosaminidase Location: 1024169-1024565 bp Feature: domain Description: Glucosaminidase Location: 1 0241 69-1 024565 bp Feature: domain Description: Peptidase_M23 Location: 1024742-1024979 bp Feature: domain Description: Peptidase_M23 Location: 1 024742-1 024979 bp Feature: gene Location: 1289877-1292000 bp Feature: gene Location: 1292005-1292925 bp Feature: domain Description: AAA_10 Location: 1292011-1292890 bp Feature: domain Description: AAA_1 0 Location: 1 29201 1 -1 292890 bp Feature: gene Location: 1293059-1294843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1293317-1294016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 29331 7-1 29401 6 bp Feature: gene Location: 1295582-1297132 bp Feature: domain Description: AAA_10 Location: 1296911-1297094 bp Feature: domain Description: AAA_1 0 Location: 1 29691 1 -1 297094 bp Feature: gene Location: 1297119-1297508 bp Feature: domain Description: TcpE Location: 1297137-1297437 bp Feature: domain Description: TcpE Location: 1 2971 37-1 297437 bp Feature: gene Location: 1297568-1298071 bp Feature: domain Description: ArdA Location: 1297586-1298057 bp Feature: domain Description: ArdA Location: 1 297586-1 298057 bp Feature: gene Location: 1298073-1298282 bp Feature: gene Location: 1298412-1300322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1298745-1299483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 298745-1 299483 bp Feature: domain Description: HNHc Note: nucleases Location: 1300038-1300203 bp Feature: domain Description: HNHc Note: nucleases Location: 1 300038-1 300203 bp Feature: gene Location: 1301202-1302386 bp Feature: domain Description: HTH_XRE Location: 1301232-1301376 bp Feature: domain Description: HTH_XRE Location: 1 301 232-1 301 376 bp Feature: domain Description: Rol_Rep_N Location: 1301409-1301673 bp Feature: domain Description: Rol_Rep_N Location: 1 301 409-1 301 673 bp Feature: domain Description: Rep_trans Location: 1301697-1302309 bp Feature: domain Description: Rep_trans Location: 1 301 697-1 302309 bp Feature: gene Location: 1302479-1302622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), AAA_10 (pfam12846), TcpE (pfam12648), ArdA (pfam07275), HTH_XRE (smart00530), Rol_Rep_N (pfam18106)
Rep_trans (pfam02486)

Seq: JYCO01000024.1 Enterococcus faecium strain E31 contig_24, whole genome shotgun sequence (31010 bp)
Overview 1 RT 1: 9399-14139 bp Neighborhood of RT #1 [9399, 14139] BcsQ Rve RVT_N RVT-GII HTH_XRE Feature: gene Location: 9399-10352 bp Feature: domain Description: BcsQ Location: 9447-10161 bp Feature: domain Description: BcsQ Location: 9447-10161 bp Feature: gene Location: 11115-11801 bp Feature: domain Description: Rve Location: 11124-11772 bp Feature: domain Description: Rve Location: 1112 4-11772 bp Feature: gene Location: 11835-12422 bp Feature: RT Description: RVT_N Location: 11865-12108 bp Feature: RT Description: RVT_N Location: 11865-12 108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12171-12402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 171-12 402 bp Feature: gene Location: 13217-13465 bp Feature: domain Description: HTH_XRE Location: 13238-13382 bp Feature: domain Description: HTH_XRE Location: 132 38-13382 bp Feature: gene Location: 13840-14139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT_N (pfam13655), RVT-GII, HTH_XRE (smart00530), BcsQ (COG1192)