myRT

myRT report for GCA_000953895.1_ASM95389v1

Download annotations/find similar RTs

Seq: BBUQ01000134.1 Enterobacter cloacae DNA, contig: contig_107_1, whole genome shotgun sequence (8629 bp)
Overview 1 RT 1: 1958-5986 bp Neighborhood of RT #1 [1958, 5986] MobA_MobL RVT-Retrons HTH_XRE Feature: gene Location: 1958-3358 bp Feature: domain Description: MobA_MobL Location: 2009-2546 bp Feature: domain Description: MobA_MobL Location: 2009-2546 bp Feature: gene Location: 3436-4086 bp Feature: gene Location: 4306-5406 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4447-5002 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4447-5002 bp Feature: gene Location: 5399-5680 bp Feature: domain Description: HTH_XRE Location: 5414-5579 bp Feature: domain Description: HTH_XRE Location: 541 4-5579 bp Feature: gene Location: 5771-5986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobA_MobL (pfam03389), RVT-Retrons, HTH_XRE (smart00530)

Seq: BBUQ01000082.1 Enterobacter cloacae DNA, contig: contig_59_1, whole genome shotgun sequence (6375 bp)
Overview 1 RT 1: 3-3714 bp Neighborhood of RT #1 [3, 3719] RVT-GII GIIM PinE Feature: gene Location: 3-923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57-561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57-561 bp Feature: domain Description: GIIM Note: maturase Location: 609-813 bp Feature: domain Description: GIIM Note: maturase Location: 609-813 bp Feature: gene Location: 984-3080 bp Feature: gene Location: 3096-3719 bp Feature: domain Description: PinE Location: 3171-3714 bp Feature: domain Description: PinE Location: 3171-3714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, GIIM (pfam08388)

Seq: BBUQ01000041.1 Enterobacter cloacae DNA, contig: contig_30_2, whole genome shotgun sequence (2639 bp)
Overview 1 RT 1: 2-2117 bp Neighborhood of RT #1 [2, 2515] TOPRIM_OLD RVT-Retrons Feature: gene Location: 2-1231 bp Feature: domain Description: TOPRIM_OLD Location: 302-506 bp Feature: domain Description: TOPRIM_OLD Location: 3 02-506 bp Feature: gene Location: 1409-2515 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1514-2117 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1514-2117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TOPRIM_OLD (cd01026)