myRT

myRT report for GCA_000953935.1_ASM95393v1

Download annotations/find similar RTs

Seq: BBUK01000033.1 Legionella pneumophila DNA, contig: lpymt_contig000033, strain: Ymt294, whole genome shotgun sequence (116504 bp)
Overview 1 RT 1: 112555-116258 bp Neighborhood of RT #1 [112555, 116287] Phage_int_SAM_2 Integrase_1 Phage_int_SAM_2 RVT-Retrons DegQ Feature: gene Location: 112555-113454 bp Ori: GAN29477.1 Feature: domain Description: Phage_int_SAM_2 Location: 112621-112843 bp Feature: domain Description: Phage_int_SAM_2 Location: 1 1 2621 -1 1 2843 bp Feature: domain Description: Integrase_1 Location: 112924-113269 bp Feature: domain Description: Integrase_1 Location: 1 1 2924-1 1 3269 bp Feature: gene Location: 113447-114253 bp Ori: GAN29478.1 Feature: domain Description: Phage_int_SAM_2 Location: 113498-113705 bp Feature: domain Description: Phage_int_SAM_2 Location: 1 1 3498-1 1 3705 bp Feature: gene Location: 114833-116287 bp Ori: GAN29479.1 Gene: hhoA Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 114956-115394 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 4956-1 1 5394 bp Feature: domain Description: DegQ Location: 115718-116258 bp Feature: domain Description: DegQ Location: 1 1 571 8-1 1 6258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835), RVT-Retrons, DegQ (pfam08181)

Seq: BBUK01000036.1 Legionella pneumophila DNA, contig: lpymt_contig000036, strain: Ymt294, whole genome shotgun sequence (48150 bp)
Overview 1 RT 1: 57-2873 bp Neighborhood of RT #1 [57, 2873] RVT-Retrons conj_TOL_TraD Feature: gene Location: 57-431 bp Ori: GAN29489.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 186-363 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 186-363 bp Feature: gene Location: 613-2547 bp Ori: GAN29490.1 Feature: domain Description: conj_TOL_TraD Location: 631-2539 bp Feature: domain Description: conj_TOL_TraD Location: 631-2 539 bp Feature: gene Location: 2544-2873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, conj_TOL_TraD (TIGR03754)

Seq: BBUK01000080.1 Legionella pneumophila DNA, contig: lpymt_contig000080, strain: Ymt294, whole genome shotgun sequence (14157 bp)
Overview 1 RT 1: 8975-13841 bp Neighborhood of RT #1 [8975, 13841] ElaA RVT-UG18 Ubox Feature: gene Location: 8975-9421 bp Ori: GAN30850.1 Feature: domain Description: ElaA Location: 8981-9416 bp Feature: domain Description: ElaA Location: 8981-9416 bp Feature: gene Location: 9602-10543 bp Feature: gene Location: 10482-11108 bp Ori: GAN30852.1 Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 10485-10662 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 10485-10662 bp Feature: gene Location: 11589-12218 bp Ori: GAN30853.1 Feature: domain Description: Ubox Location: 11751-11883 bp Feature: domain Description: Ubox Location: 11751-11883 bp Feature: gene Location: 12420-13841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ElaA (COG2153), RVT-UG18, Ubox (smart00504)

Seq: BBUK01000079.1 Legionella pneumophila DNA, contig: lpymt_contig000079, strain: Ymt294, whole genome shotgun sequence (46472 bp)
Overview 1 RT 1: 17543-24180 bp Neighborhood of RT #1 [17543, 24188] TraA_Ti RVT_N RVT-GII GIIM TraD Feature: gene Location: 17543-18319 bp Feature: gene Location: 18553-21204 bp Ori: GAN30813.1 Gene: recD2_2 Feature: domain Description: TraA_Ti Location: 18556-20719 bp Feature: domain Description: TraA_Ti Location: 18556-20719 bp Feature: gene Location: 21989-23476 bp Ori: GAN30814.1 Gene: ltrA Feature: domain Description: RVT_N Location: 22043-22286 bp Feature: domain Description: RVT_N Location: 2204 3-22286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22331-22988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22331-22988 bp Feature: domain Description: GIIM Note: maturase Location: 23054-23288 bp Feature: domain Description: GIIM Note: maturase Location: 23054 -23288 bp Feature: gene Location: 23732-23938 bp Feature: gene Location: 23925-24188 bp Ori: GAN30816.1 Feature: domain Description: TraD Location: 24006-24180 bp Feature: domain Description: TraD Location: 24 006-24 180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraA_Ti (TIGR02768), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraD (pfam06412)

Seq: BBUK01000123.1 Legionella pneumophila DNA, contig: lpymt_contig000123, strain: Ymt294, whole genome shotgun sequence (1971 bp)
Overview 1 RT 1: 99-1677 bp Neighborhood of RT #1 [99, 1958] DUF772 RVT-DGRs Feature: gene Location: 99-1559 bp Ori: GAN31479.1 Feature: domain Description: DUF772 Location: 282-474 bp Feature: domain Description: DUF772 Location: 282-474 bp Feature: gene Location: 1578-1958 bp Ori: GAN31480.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1584-1677 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15 84-1677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-DGRs