myRT

myRT report for GCA_000955645.1_PiZT

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Seq: ATMK01000001.1 Prevotella intermedia ZT contig00001, whole genome shotgun sequence (277500 bp)
Overview 1 RT 1: 125865-135712 bp Neighborhood of RT #1 [125865, 135735] DUF3408 Relaxase RVT-UG3 RVT-UG8 VL_LC_FACS_like prfB Feature: gene Location: 125865-126335 bp Ori: KJJ88168.1 Feature: domain Description: DUF3408 Location: 125934-126321 bp Feature: domain Description: DUF3408 Location: 1 25934-1 26321 bp Feature: gene Location: 127110-128171 bp Ori: KJJ88169.1 Feature: domain Description: Relaxase Location: 127137-127854 bp Feature: domain Description: Relaxase Location: 1 271 37-1 27854 bp Feature: gene Location: 128593-129783 bp Ori: KJJ88170.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 128884-129346 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 28884-1 29346 bp Feature: gene Location: 129780-131696 bp Ori: KJJ88171.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 130281-130725 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 30281 -1 30725 bp Feature: gene Location: 132779-134587 bp Ori: KJJ88172.1 Feature: domain Description: VL_LC_FACS_like Location: 132878-134543 bp Feature: domain Description: VL_LC_FACS_like Location: 1 32878-1 34543 bp Feature: gene Location: 134617-135735 bp Ori: KJJ88173.1 Feature: domain Description: prfB Location: 134629-135712 bp Feature: domain Description: prfB Location: 1 34629-1 3571 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3408 (pfam11888), Relaxase (pfam03432), RVT-UG3, RVT-UG8, VL_LC_FACS_like (cd05907), prfB (TIGR00020)

Seq: ATMK01000018.1 Prevotella intermedia ZT contig00018, whole genome shotgun sequence (58158 bp)
Overview 1 RT 1: 31308-45754 bp Neighborhood of RT #1 [31308, 45828] DUF4394 DUF4394 Cleaved_Adhesin Inhibitor_I69 Peptidase_C10 LRR_3 LRR_5 MBG_2 MBG_2 RVT-UG8 RVT-UG3 Mob_Pre dnaG Toprim_2 Feature: gene Location: 31308-35753 bp Ori: KJJ86698.1 Feature: domain Description: DUF4394 Location: 32007-32106 bp Feature: domain Description: DUF4394 Location: 32 007-32 106 bp Feature: domain Description: DUF4394 Location: 32148-32283 bp Feature: domain Description: DUF4394 Location: 32 148-32 2 83 bp Feature: domain Description: Cleaved_Adhesin Location: 35127-35421 bp Feature: domain Description: Cleaved_Adhesin Location: 3512 7-3542 1 bp Feature: gene Location: 35888-38428 bp Ori: KJJ86699.1 Feature: domain Description: Inhibitor_I69 Location: 35957-36251 bp Feature: domain Description: Inhibitor_I69 Location: 35957-362 51 bp Feature: domain Description: Peptidase_C10 Location: 36350-36950 bp Feature: domain Description: Peptidase_C10 Location: 36350-36950 bp Feature: domain Description: LRR_3 Location: 37289-37412 bp Feature: domain Description: LRR_3 Location: 372 89-37412 bp Feature: domain Description: LRR_5 Location: 37538-37673 bp Feature: domain Description: LRR_5 Location: 37538-37673 bp Feature: domain Description: MBG_2 Location: 37826-38024 bp Feature: domain Description: MBG_2 Location: 3782 6-3802 4 bp Feature: domain Description: MBG_2 Location: 38042-38267 bp Feature: domain Description: MBG_2 Location: 38042 -382 67 bp Feature: gene Location: 39447-41636 bp Ori: KJJ86700.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 40068-40521 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 40068-4052 1 bp Feature: gene Location: 41627-43087 bp Ori: KJJ86701.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 42083-42617 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 42 083-42 617 bp Feature: gene Location: 43307-44563 bp Ori: KJJ86702.1 Feature: domain Description: Mob_Pre Location: 43313-43940 bp Feature: domain Description: Mob_Pre Location: 43313-43940 bp Feature: gene Location: 44896-45828 bp Ori: KJJ86703.1 Feature: domain Description: dnaG Location: 45013-45193 bp Feature: domain Description: dnaG Location: 45013-45193 bp Feature: domain Description: Toprim_2 Location: 45493-45754 bp Feature: domain Description: Toprim_2 Location: 45493-45754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4394 (pfam14339), Cleaved_Adhesin (pfam07675), Inhibitor_I69 (pfam13734), Peptidase_C10 (pfam01640), LRR_3 (sd00036), LRR_5 (pfam13306), MBG_2 (pfam18676), RVT-UG8, RVT-UG3, Mob_Pre (pfam01076)
dnaG (TIGR01391), Toprim_2 (pfam13155)