myRT

myRT report for GCA_000959825.1_ASM95982v1

Download annotations/find similar RTs

Seq: JZEQ01000096.1 Vibrio vulnificus strain SC9729 contig_122, whole genome shotgun sequence (235189 bp)
Overview 1 RT 1: 229664-233947 bp Neighborhood of RT #1 [229664, 234180] RplT RVT-GII RVT-GII GIIM integrase_gron DUF2971 Feature: gene Location: 229664-230017 bp Feature: domain Description: RplT Location: 229667-230015 bp Feature: domain Description: RplT Location: 229667-23001 5 bp Feature: gene Location: 230030-230620 bp Feature: gene Location: 230817-231275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231030-231219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 030-231 21 9 bp Feature: gene Location: 231308-232087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231314-231638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 31 4-231 638 bp Feature: domain Description: GIIM Note: maturase Location: 231689-231905 bp Feature: domain Description: GIIM Note: maturase Location: 231 689-231 905 bp Feature: gene Location: 232168-233130 bp Feature: domain Description: integrase_gron Location: 232183-233128 bp Feature: domain Description: integrase_gron Location: 2321 83-2331 28 bp Feature: gene Location: 233368-234180 bp Feature: domain Description: DUF2971 Location: 233737-233947 bp Feature: domain Description: DUF2971 Location: 233737-233947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RplT (COG0292), RVT-GII, GIIM (pfam08388), integrase_gron (TIGR02249), DUF2971 (pfam11185)

Seq: JZEQ01000130.1 Vibrio vulnificus strain SC9729 contig_157, whole genome shotgun sequence (10850 bp)
Overview 1 RT 1: 81-3098 bp Neighborhood of RT #1 [81, 3106] AAA_23 RVT-Retrons DUF1508 HTH_XRE Feature: gene Location: 81-791 bp Feature: domain Description: AAA_23 Location: 324-759 bp Feature: domain Description: AAA_2 3 Location: 32 4-759 bp Feature: gene Location: 784-1707 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 886-1468 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 886-1468 bp Feature: gene Location: 2306-2488 bp Feature: domain Description: DUF1508 Location: 2342-2465 bp Feature: domain Description: DUF1508 Location: 2 342 -2 465 bp Feature: gene Location: 2897-3106 bp Feature: domain Description: HTH_XRE Location: 2927-3098 bp Feature: domain Description: HTH_XRE Location: 2 92 7-3098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_23 (pfam13476), RVT-Retrons, DUF1508 (pfam07411), HTH_XRE (smart00530)

Seq: JZEQ01000019.1 Vibrio vulnificus strain SC9729 contig_30, whole genome shotgun sequence (3321 bp)
Overview 1 RT 1: 72-1397 bp Neighborhood of RT #1 [72, 1397] RVT-GII Feature: gene Location: 72-533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291-381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291-3 81 bp Feature: gene Location: 676-909 bp Feature: gene Location: 1029-1397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII