myRT

myRT report for GCA_000960235.1_ASM96023v1

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Seq: JZJQ01000034.1 Clostridium sporogenes strain 88-0163 contig00025, whole genome shotgun sequence (49951 bp)
Overview 1 RT 1: 9869-17638 bp Neighborhood of RT #1 [9869, 17646] PhnK PBP1_ABC_uncharacterized_transporter RVT-UG5 nitrilase COG3682 Feature: gene Location: 9869-10624 bp Feature: domain Description: PhnK Location: 9872-10613 bp Feature: domain Description: PhnK Location: 9872-1 061 3 bp Feature: gene Location: 10646-11626 bp Feature: domain Description: PBP1_ABC_uncharacterized_transporter Location: 10748-11579 bp Feature: domain Description: PBP1 _ABC_uncharacterized_transporter Location: 1 0748-1 1 579 bp Feature: gene Location: 12978-16223 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13428-13914 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 3428-1 391 4 bp Feature: domain Description: nitrilase Location: 15462-16119 bp Feature: domain Description: nitrilase Location: 1 5462-1 61 1 9 bp Feature: gene Location: 16238-16867 bp Feature: gene Location: 17266-17646 bp Feature: domain Description: COG3682 Location: 17278-17638 bp Feature: domain Description: COG3682 Location: 1 7278-1 7638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhnK (COG4107), PBP1_ABC_uncharacterized_transporter, RVT-UG5, nitrilase (cl11424), COG3682 (Predicted transcriptional regulator )

Seq: JZJQ01000111.1 Clostridium sporogenes strain 88-0163 contig00032, whole genome shotgun sequence (89720 bp)
Overview 1 RT 1: 24931-29239 bp Neighborhood of RT #1 [24931, 29244] SAM_DCase_Bsu COG1568 RVT-CRISPR-like Mor PRK14453 Feature: gene Location: 24931-25311 bp Feature: domain Description: SAM_DCase_Bsu Location: 24970-25300 bp Feature: domain Description: SAM_DCase_Bsu Location: 2 4970-2 5300 bp Feature: gene Location: 25435-26646 bp Feature: domain Description: COG1568 Location: 25495-26383 bp Feature: domain Description: COG1568 Location: 2 5495-2 6383 bp Feature: gene Location: 27001-27138 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 27007-27130 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2 7007-2 7130 bp Feature: gene Location: 27355-27630 bp Feature: domain Description: Mor Location: 27388-27619 bp Feature: domain Description: Mor Location: 2 7388-2 7619 bp Feature: gene Location: 28210-29244 bp Feature: domain Description: PRK14453 Location: 28216-29239 bp Feature: domain Description: PRK14453 Location: 2 82 16-2 92 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SAM_DCase_Bsu (TIGR03330), COG1568 (Predicted methyltransferase ), RVT-CRISPR, Mor (pfam08765), PRK14453 (chloramphenicol/florfenicol resistance protein; Provisional)

Seq: JZJQ01000041.1 Clostridium sporogenes strain 88-0163 contig00172, whole genome shotgun sequence (85179 bp)
Overview 1 RT 1: 46028-50802 bp Neighborhood of RT #1 [46028, 50834] LAGLIDADG_3 RVT-Retrons PRK01286 PRK05318 Feature: gene Location: 46028-46438 bp Feature: domain Description: LAGLIDADG_3 Location: 46040-46274 bp Feature: domain Description: LAGLIDADG_3 Location: 46040-46274 bp Feature: gene Location: 46741-47640 bp Feature: gene Location: 47787-49013 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47955-48516 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47955-48516 bp Feature: gene Location: 49065-49238 bp Feature: gene Location: 49548-50834 bp Feature: domain Description: PRK01286 Location: 49644-50508 bp Feature: domain Description: PRK01286 Location: 49644-50508 bp Feature: domain Description: PRK05318 Location: 50541-50802 bp Feature: domain Description: PRK053 18 Location: 50541-50802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LAGLIDADG_3 (pfam14528), RVT-Retrons, PRK01286 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional)