myRT

myRT report for GCA_000960765.1_ASM96076v1

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Seq: JYNH01000105.1 Desulfosporosinus sp. I2 contig00105, whole genome shotgun sequence (16013 bp)
Overview 1 RT 1: 38-4496 bp Neighborhood of RT #1 [38, 4496] LZ_Tnp_IS66 zf-IS66 RVT-GII RVT-GII Intron_maturas2 Feature: gene Location: 38-685 bp Ori: KJR45578.1 Feature: domain Description: LZ_Tnp_IS66 Location: 191-407 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 91 -407 bp Feature: domain Description: zf-IS66 Location: 431-566 bp Feature: domain Description: zf-IS66 Location: 431 -566 bp Feature: gene Location: 1488-1814 bp Ori: KJR45579.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1614-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 4-1 797 bp Feature: gene Location: 1936-3069 bp Ori: KJR45580.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939-2428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 939-2428 bp Feature: domain Description: Intron_maturas2 Location: 2500-2794 bp Feature: domain Description: Intron_maturas2 Location: 2500-2794 bp Feature: gene Location: 3665-4096 bp Feature: gene Location: 4275-4496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), RVT-GII, Intron_maturas2 (pfam01348)

Seq: JYNH01000189.1 Desulfosporosinus sp. I2 contig00189, whole genome shotgun sequence (8160 bp)
Overview 1 RT 1: 639-4701 bp Neighborhood of RT #1 [639, 4781] DpaA_N RVT-GII spore_ger_x_C GerA Feature: gene Location: 639-797 bp Feature: gene Location: 1218-1475 bp Ori: KJR44524.1 Feature: domain Description: DpaA_N Location: 1248-1440 bp Feature: domain Description: DpaA_N Location: 12 48-1440 bp Feature: gene Location: 1682-2056 bp Ori: KJR44525.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1694-1985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1694-1985 bp Feature: gene Location: 2071-3246 bp Ori: KJR44526.1 Feature: domain Description: spore_ger_x_C Location: 2101-3220 bp Feature: domain Description: spore_ger_x_C Location: 2 101-32 2 0 bp Feature: gene Location: 3243-4781 bp Ori: KJR44527.1 Feature: domain Description: GerA Location: 3306-4701 bp Feature: domain Description: GerA Location: 3306-4701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DpaA_N (pfam16924), RVT-GII, spore_ger_x_C (TIGR02887), GerA (pfam03323)

Seq: JYNH01000243.1 Desulfosporosinus sp. I2 contig00243, whole genome shotgun sequence (2959 bp)
Overview 1 RT 1: 274-2460 bp Neighborhood of RT #1 [274, 2621] RVT-UG12 Resolvase Feature: gene Location: 274-417 bp Feature: gene Location: 483-1700 bp Ori: KJR44223.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 825-1275 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 825-1275 bp Feature: gene Location: 1971-2621 bp Ori: KJR44224.1 Feature: domain Description: Resolvase Location: 1983-2460 bp Feature: domain Description: Resolvase Location: 1983 -2460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG12, Resolvase (smart00857)

Seq: JYNH01000159.1 Desulfosporosinus sp. I2 contig00159, whole genome shotgun sequence (10616 bp)
Overview 1 RT 1: 226-4986 bp Neighborhood of RT #1 [226, 5000] URO-D_like RVT-GII GIIM DUF4372 DDE_Tnp_1 Feature: gene Location: 226-1467 bp Ori: KJR44817.1 Feature: domain Description: URO-D_like Location: 799-1123 bp Feature: domain Description: URO-D_like Location: 799-1123 bp Feature: gene Location: 2279-3586 bp Ori: KJR44818.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2564-3203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2564 -3203 bp Feature: domain Description: GIIM Note: maturase Location: 3281-3503 bp Feature: domain Description: GIIM Note: maturase Location: 3281-3503 bp Feature: gene Location: 3764-3943 bp Feature: gene Location: 4092-5000 bp Ori: KJR44820.1 Feature: domain Description: DUF4372 Location: 4149-4305 bp Feature: domain Description: DUF4 372 Location: 4 14 9-4 305 bp Feature: domain Description: DDE_Tnp_1 Location: 4467-4986 bp Feature: domain Description: DDE_Tnp_1 Location: 4 4 67-4 986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT URO-D_like (cd03465), RVT-GII, GIIM (pfam08388), DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609)

Seq: JYNH01000198.1 Desulfosporosinus sp. I2 contig00198, whole genome shotgun sequence (6363 bp)
Overview 1 RT 1: 2087-5949 bp Neighborhood of RT #1 [2087, 6269] AAA_21 Dam RVT-GII Intron_maturas2 Feature: gene Location: 2087-3166 bp Ori: KJR44454.1 Feature: domain Description: AAA_21 Location: 2144-2384 bp Feature: domain Description: AAA_21 Location: 2144-2384 bp Feature: gene Location: 3223-4110 bp Ori: KJR44455.1 Feature: domain Description: Dam Location: 3241-4009 bp Feature: domain Description: Dam Location: 3241-4009 bp Feature: gene Location: 4497-6269 bp Ori: KJR44456.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4770-5562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4770-5 5 62 bp Feature: domain Description: Intron_maturas2 Location: 5643-5949 bp Feature: domain Description: Intron_maturas2 Location: 5 643-5 949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), Dam (pfam05869), RVT-GII, Intron_maturas2 (pfam01348)

Seq: JYNH01000163.1 Desulfosporosinus sp. I2 contig00163, whole genome shotgun sequence (10339 bp)
Overview 1 RT 1: 1938-10179 bp Neighborhood of RT #1 [1938, 10187] CmuC_like RVT-GII Intron_maturas2 RVT-GII matK HNHc RVT-GII matK HTH_21 InsE Feature: gene Location: 1938-3203 bp Ori: KJR44780.1 Feature: domain Description: CmuC_like Location: 2631-3114 bp Feature: domain Description: CmuC_like Location: 26 31-3114 bp Feature: gene Location: 3285-3398 bp Feature: gene Location: 4076-4582 bp Ori: KJR44782.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4091-4226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4091-4226 bp Feature: domain Description: Intron_maturas2 Location: 4298-4571 bp Feature: domain Description: Intron_maturas2 Location: 4298-4571 bp Feature: gene Location: 4750-6564 bp Ori: KJR44783.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5020-5815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5020-5815 bp Feature: domain Description: matK Location: 5932-6145 bp Feature: domain Description: matK Location: 5932-6 145 bp Feature: domain Description: HNHc Note: nucleases Location: 6349-6505 bp Feature: domain Description: HNHc Note: nucleases Location: 6 349-6 505 bp Feature: gene Location: 7173-8969 bp Ori: KJR44784.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7437-8265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7437-826 5 bp Feature: domain Description: matK Location: 8442-8646 bp Feature: domain Description: matK Location: 8442-86 46 bp Feature: gene Location: 9470-9874 bp Ori: KJR44785.1 Feature: domain Description: HTH_21 Location: 9599-9746 bp Feature: domain Description: HTH_21 Location: 9599-9746 bp Feature: gene Location: 9882-10187 bp Ori: KJR44786.1 Feature: domain Description: InsE Location: 9891-10179 bp Feature: domain Description: InsE Location: 9891-10179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CmuC_like (cd03309), RVT-GII, Intron_maturas2 (pfam01348), matK (CHL00002), HNHc (smart00507), HTH_21 (pfam13276), InsE (COG2963)