myRT

myRT report for GCA_000964255.1_ASM96425v1

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Seq: LANC01000012.1 (814835 bp)
Overview 1 RT 1: 312-6146 bp 2 RT 2: 648690-655448 bp 3 RT 3: 743217-745411 bp 4 RT 4: 748130-751271 bp Neighborhood of RT #1 [312, 6169] CRISPR_Cas2 RVT-CRISPR Cas1_I-II-III Cmr6 Cas_Cmr5 Neighborhood of RT #2 [648690, 655448] Cas10_III Cmr1 CRISPR_Cas6 RVT-CRISPR Neighborhood of RT #3 [743217, 745411] RVT-GII GIIM Neighborhood of RT #4 [748130, 751271] YebA RVT-GII GIIM Feature: gene Location: 312-893 bp Feature: gene Location: 1423-1701 bp Feature: domain Description: CRISPR_Cas2 Location: 1432-1636 bp Feature: domain Description: CRISPR_Cas2 Location: 1 432-1 636 bp Feature: gene Location: 1705-4620 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2869-3481 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2869-3481 bp Feature: domain Description: Cas1_I-II-III Location: 3673-4582 bp Feature: domain Description: Cas1 _I-II-III Location: 3673-4582 bp Feature: gene Location: 4620-5768 bp Feature: domain Description: Cmr6 Location: 4785-5490 bp Feature: domain Description: Cmr6 Location: 4785-5490 bp Feature: gene Location: 5765-6169 bp Feature: domain Description: Cas_Cmr5 Location: 5795-6146 bp Feature: domain Description: Cas_Cmr5 Location: 5795-61 46 bp Feature: gene Location: 648690-650495 bp Feature: domain Description: Cas10_III Location: 648705-650061 bp Feature: domain Description: Cas1 0_III Location: 648705-650061 bp Feature: gene Location: 650501-651919 bp Feature: domain Description: Cmr1 Location: 650591-651641 bp Feature: domain Description: Cmr1 Location: 650591 -651 641 bp Feature: gene Location: 652369-654390 bp Feature: domain Description: CRISPR_Cas6 Location: 652933-653227 bp Feature: domain Description: CRISPR_Cas6 Location: 652933-653227 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 653560-654112 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 653560-6541 1 2 bp Feature: gene Location: 654273-654677 bp Feature: gene Location: 655200-655448 bp Feature: gene Location: 743217-743537 bp Feature: gene Location: 743473-743640 bp Feature: gene Location: 743643-744962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743898-744564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743898-744564 bp Feature: domain Description: GIIM Note: maturase Location: 744663-744861 bp Feature: domain Description: GIIM Note: maturase Location: 744663-744861 bp Feature: gene Location: 744940-745101 bp Feature: gene Location: 745184-745411 bp Feature: gene Location: 748130-748747 bp Feature: domain Description: YebA Location: 748142-748517 bp Feature: domain Description: YebA Location: 7481 42-74851 7 bp Feature: gene Location: 748831-749019 bp Feature: gene Location: 749272-750591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749527-750193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749527-7501 93 bp Feature: domain Description: GIIM Note: maturase Location: 750289-750490 bp Feature: domain Description: GIIM Note: maturase Location: 750289-750490 bp Feature: gene Location: 750569-750826 bp Feature: gene Location: 751080-751271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas2 (pfam09827), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6 (COG1604), Cas_Cmr5 (pfam09701), Cas10_III (cl21742), Cmr1 (COG1367), CRISPR_Cas6 (pfam10040), RVT-GII, GIIM (pfam08388)
YebA (COG1305)

Seq: LANC01000010.1 (806097 bp)
Overview 1 RT 1: 578993-585001 bp Neighborhood of RT #1 [578993, 585120] YfmG RVT-DGRs Hrd YfmG Feature: gene Location: 578993-579151 bp Feature: gene Location: 579750-580784 bp Feature: domain Description: YfmG Location: 580014-580710 bp Feature: domain Description: YfmG Location: 580014-580710 bp Feature: gene Location: 581023-581916 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 581182-581770 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 581182 -581770 bp Feature: gene Location: 581948-582430 bp Feature: domain Description: Hrd Location: 582194-582392 bp Feature: domain Description: Hrd Location: 582 194-582 392 bp Feature: gene Location: 582427-585120 bp Feature: domain Description: YfmG Location: 584341-585001 bp Feature: domain Description: YfmG Location: 584341-585001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Hrd (LOAD_Hrd)

Seq: LANC01000007.1 (885146 bp)
Overview 1 RT 1: 335795-339173 bp 2 RT 2: 345934-349287 bp Neighborhood of RT #1 [335795, 339173] TnpB_IS66 RVT-GII GIIM Neighborhood of RT #2 [345934, 349287] RVT-GII GIIM Feature: gene Location: 335795-336151 bp Feature: domain Description: TnpB_IS66 Location: 335822-336110 bp Feature: domain Description: TnpB_IS66 Location: 3 3 5822-3 3 6110 bp Feature: gene Location: 336191-336391 bp Feature: gene Location: 336502-337776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336712-337378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 6712-3 3 73 78 bp Feature: domain Description: GIIM Note: maturase Location: 337477-337675 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 7477-3 3 7675 bp Feature: gene Location: 337891-338199 bp Feature: gene Location: 339042-339173 bp Feature: gene Location: 345934-346251 bp Feature: gene Location: 346381-346698 bp Feature: gene Location: 347358-348677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347613-348279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 47613 -3 48279 bp Feature: domain Description: GIIM Note: maturase Location: 348378-348576 bp Feature: domain Description: GIIM Note: maturase Location: 3 483 78-3 48576 bp Feature: gene Location: 348786-349106 bp Feature: gene Location: 349153-349287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388)