myRT

myRT report for GCA_000964585.1_ASM96458v1

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Seq: LANM01000008.1 Orientia tsutsugamushi str. Karp karp.contig.7_1, whole genome shotgun sequence (32452 bp)
Overview 1 RT 1: 21082-27866 bp Neighborhood of RT #1 [21082, 27866] DUF3857 DUF3857 RVT-GII Feature: gene Location: 21082-22980 bp Ori: KJV57117.1 Feature: domain Description: DUF3857 Location: 21217-21694 bp Feature: domain Description: DUF3857 Location: 21 21 7-21 694 bp Feature: gene Location: 23026-24954 bp Ori: KJV57120.1 Feature: domain Description: DUF3857 Location: 23170-23671 bp Feature: domain Description: DUF3857 Location: 231 70-23671 bp Feature: gene Location: 25977-26216 bp Ori: KJV57127.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25989-26148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25989-261 48 bp Feature: gene Location: 27445-27561 bp Feature: gene Location: 27603-27866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3857 (pfam12969), RVT-GII

Seq: LANM01000007.1 Orientia tsutsugamushi str. Karp karp.contig.6_1, whole genome shotgun sequence (32643 bp)
Overview 1 RT 1: 1-2213 bp Neighborhood of RT #1 [1, 2215] RVT-GII PRK14341 Feature: gene Location: 1-157 bp Feature: gene Location: 154-546 bp Ori: KJV57196.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163-544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163-544 bp Feature: gene Location: 646-807 bp Feature: gene Location: 1589-2215 bp Ori: KJV57224.1 Gene: lipB Feature: domain Description: PRK14341 Location: 1592-2213 bp Feature: domain Description: PRK14341 Location: 1592 -2 2 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK14341 (lipoyl(octanoyl) transferase LipB)

Seq: LANM01000004.1 Orientia tsutsugamushi str. Karp karp.contig.3_1, whole genome shotgun sequence (40611 bp)
Overview 1 RT 1: 19785-27686 bp Neighborhood of RT #1 [19785, 27712] CcmF CorB RVT-GII PRK10543 sucA Feature: gene Location: 19785-21668 bp Ori: KJV57386.1 Feature: domain Description: CcmF Location: 19788-21618 bp Feature: domain Description: CcmF Location: 19788-21618 bp Feature: gene Location: 21658-22926 bp Ori: KJV57358.1 Feature: domain Description: CorB Location: 21673-22903 bp Feature: domain Description: CorB Location: 21673 -22903 bp Feature: gene Location: 23869-24039 bp Ori: KJV57353.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23872-24022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 872-24022 bp Feature: gene Location: 24139-24780 bp Ori: KJV57357.1 Gene: sodB Feature: domain Description: PRK10543 Location: 24181-24763 bp Feature: domain Description: PRK10543 Location: 24181-24763 bp Feature: gene Location: 24821-27712 bp Ori: KJV57370.1 Gene: sucA Feature: domain Description: sucA Location: 24842-27686 bp Feature: domain Description: sucA Location: 24842-27686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmF (COG1138), CorB (COG4536), RVT-GII, PRK10543 (superoxide dismutase ), sucA (PRK09404)

Seq: LANM01000023.1 Orientia tsutsugamushi str. Karp karp.contig.22_1, whole genome shotgun sequence (17883 bp)
Overview 1 RT 1: 1-1993 bp Neighborhood of RT #1 [1, 2049] RVT_N RVT-GII IbpA HNH Feature: gene Location: 1-921 bp Ori: KJV55675.1 Feature: domain Description: RVT_N Location: 4-247 bp Feature: domain Description: RVT_N Location: 4 -24 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295-913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295-913 bp Feature: gene Location: 1053-1511 bp Ori: KJV55681.1 Feature: domain Description: IbpA Location: 1110-1506 bp Feature: domain Description: IbpA Location: 1110-1506 bp Feature: gene Location: 1765-2049 bp Ori: KJV55669.1 Feature: domain Description: HNH Note: nucleases Location: 1894-1993 bp Feature: domain Description: HNH Note: nucleases Location: 1894 -1993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, IbpA (COG0071), HNH (pfam01844)

Seq: LANM01000003.1 Orientia tsutsugamushi str. Karp karp.contig.2_1, whole genome shotgun sequence (43767 bp)
Overview 1 RT 1: 30659-35153 bp Neighborhood of RT #1 [30659, 35197] TraC-F-type TraW PRK13737 RVT-GII ANK ANK Feature: gene Location: 30659-30973 bp Ori: KJV57401.1 Feature: domain Description: TraC-F-type Location: 30665-30791 bp Feature: domain Description: TraC-F-type Location: 30665 -30791 bp Feature: domain Description: TraW Location: 30812-30962 bp Feature: domain Description: TraW Location: 30812-30962 bp Feature: gene Location: 31528-31833 bp Ori: KJV57397.1 Feature: domain Description: PRK13737 Location: 31534-31825 bp Feature: domain Description: PRK13737 Location: 315 34-31825 bp Feature: gene Location: 32463-32789 bp Ori: KJV57425.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32523-32787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325 23-32787 bp Feature: gene Location: 32950-34032 bp Feature: gene Location: 34511-35197 bp Ori: KJV57413.1 Feature: domain Description: ANK Location: 34553-34790 bp Feature: domain Description: ANK Location: 345 5 3-34790 bp Feature: domain Description: ANK Location: 34922-35153 bp Feature: domain Description: ANK Location: 34922-35 15 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), TraW (TIGR02743), PRK13737 (conjugal transfer pilus assembly protein TraU; Provisional), RVT-GII, ANK (smart00248)

Seq: LANM01000056.1 Orientia tsutsugamushi str. Karp karp.contig.55_1, whole genome shotgun sequence (7551 bp)
Overview 1 RT 1: 142-4322 bp Neighborhood of RT #1 [142, 4324] HTH_Tnp_IS630 MidA RVT-GII TrwB_AAD_bind Feature: gene Location: 142-453 bp Ori: KJV54344.1 Feature: domain Description: HTH_Tnp_IS630 Location: 154-442 bp Feature: domain Description: HTH_Tnp_IS6 30 Location: 154-442 bp Feature: gene Location: 1425-2573 bp Ori: KJV54345.1 Feature: domain Description: MidA Location: 1428-2517 bp Feature: domain Description: MidA Location: 1428-2517 bp Feature: gene Location: 3165-3287 bp Ori: KJV54343.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3171-3285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3171-3285 bp Feature: gene Location: 3564-3716 bp Feature: gene Location: 4031-4324 bp Ori: KJV54342.1 Feature: domain Description: TrwB_AAD_bind Location: 4169-4322 bp Feature: domain Description: TrwB_AAD_bind Location: 416 9-4322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_IS630 (pfam01710), MidA (COG1565), RVT-GII, TrwB_AAD_bind (pfam10412)

Seq: LANM01000075.1 Orientia tsutsugamushi str. Karp karp.contig.75_1, whole genome shotgun sequence (5316 bp)
Overview 1 RT 1: 606-2572 bp Neighborhood of RT #1 [606, 2572] RVT-GII ANK ANK Feature: gene Location: 606-863 bp Feature: gene Location: 951-1169 bp Ori: KJV52866.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957-1116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957 -1116 bp Feature: gene Location: 1527-2390 bp Ori: KJV52863.1 Feature: domain Description: ANK Location: 1533-1854 bp Feature: domain Description: ANK Location: 1533-1854 bp Feature: domain Description: ANK Location: 1899-2211 bp Feature: domain Description: ANK Location: 1899-2211 bp Feature: gene Location: 2408-2572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ANK (smart00248)

Seq: LANM01000110.1 Orientia tsutsugamushi str. Karp karp.contig.110_1, whole genome shotgun sequence (3281 bp)
Overview 1 RT 1: 409-2940 bp Neighborhood of RT #1 [409, 2940] Arm-DNA-bind_3 XerC RVT-GII Feature: gene Location: 409-585 bp Feature: gene Location: 800-1636 bp Ori: KJV51287.1 Feature: domain Description: Arm-DNA-bind_3 Location: 830-1091 bp Feature: domain Description: Arm-DNA-bind_3 Location: 8 30-1091 bp Feature: domain Description: XerC Location: 1163-1628 bp Feature: domain Description: XerC Location: 1163-1628 bp Feature: gene Location: 2125-2391 bp Ori: KJV51288.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2248-2386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2248 -238 6 bp Feature: gene Location: 2803-2940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), XerC (COG4973), RVT-GII